Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01985 and RR42_RS01990 are separated by 167 nucleotides RR42_RS01990 and RR42_RS01995 are separated by 217 nucleotides RR42_RS01995 and RR42_RS02000 are separated by 69 nucleotides
RR42_RS01985: RR42_RS01985 - zinc protease, at 444,470 to 445,831
_RS01985
RR42_RS01990: RR42_RS01990 - methyltransferase, at 445,999 to 446,538
_RS01990
RR42_RS01995: RR42_RS01995 - phosphopantetheine adenylyltransferase, at 446,756 to 447,244
_RS01995
RR42_RS02000: RR42_RS02000 - ferredoxin, at 447,314 to 447,574
_RS02000
Position (kb) 445
446
447 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 445.044 kb on - strand, within RR42_RS01985 at 445.044 kb on - strand, within RR42_RS01985 at 445.313 kb on - strand, within RR42_RS01985 at 445.317 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.358 kb on + strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.359 kb on - strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.382 kb on + strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.383 kb on - strand, within RR42_RS01985 at 445.452 kb on - strand, within RR42_RS01985 at 445.452 kb on - strand, within RR42_RS01985 at 445.466 kb on + strand, within RR42_RS01985 at 445.466 kb on + strand, within RR42_RS01985 at 445.467 kb on - strand, within RR42_RS01985 at 445.467 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.572 kb on - strand, within RR42_RS01985 at 445.712 kb on + strand at 445.712 kb on + strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.713 kb on - strand at 445.829 kb on + strand at 445.830 kb on - strand at 445.830 kb on - strand at 445.897 kb on + strand at 445.897 kb on + strand at 445.898 kb on - strand at 445.898 kb on - strand at 445.898 kb on - strand at 445.898 kb on - strand at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.416 kb on + strand, within RR42_RS01990 at 446.417 kb on - strand, within RR42_RS01990 at 446.417 kb on - strand, within RR42_RS01990 at 446.570 kb on + strand at 446.634 kb on + strand at 446.634 kb on + strand at 446.640 kb on + strand at 446.640 kb on + strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.641 kb on - strand at 446.697 kb on + strand at 446.744 kb on + strand at 446.744 kb on + strand at 447.242 kb on + strand at 447.247 kb on + strand at 447.247 kb on + strand at 447.247 kb on + strand at 447.248 kb on - strand at 447.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 445,044 - RR42_RS01985 0.42 -3.4 445,044 - RR42_RS01985 0.42 -1.4 445,313 - RR42_RS01985 0.62 -1.4 445,317 + RR42_RS01985 0.62 -3.4 445,358 + RR42_RS01985 0.65 -1.1 445,358 + RR42_RS01985 0.65 -1.6 445,358 + RR42_RS01985 0.65 -2.5 445,359 - RR42_RS01985 0.65 -2.3 445,359 - RR42_RS01985 0.65 -1.9 445,382 + RR42_RS01985 0.67 -2.0 445,382 + RR42_RS01985 0.67 -3.3 445,382 + RR42_RS01985 0.67 -1.0 445,382 + RR42_RS01985 0.67 -1.7 445,382 + RR42_RS01985 0.67 -3.1 445,383 - RR42_RS01985 0.67 -2.3 445,383 - RR42_RS01985 0.67 -1.8 445,383 - RR42_RS01985 0.67 -2.1 445,383 - RR42_RS01985 0.67 -1.9 445,383 - RR42_RS01985 0.67 -1.5 445,383 - RR42_RS01985 0.67 -1.3 445,383 - RR42_RS01985 0.67 -2.5 445,452 - RR42_RS01985 0.72 -3.1 445,452 - RR42_RS01985 0.72 -2.0 445,466 + RR42_RS01985 0.73 -3.4 445,466 + RR42_RS01985 0.73 -3.4 445,467 - RR42_RS01985 0.73 -0.2 445,467 - RR42_RS01985 0.73 -2.3 445,572 - RR42_RS01985 0.81 -2.3 445,572 - RR42_RS01985 0.81 -2.8 445,572 - RR42_RS01985 0.81 -3.2 445,572 - RR42_RS01985 0.81 +0.0 445,712 + -1.2 445,712 + -2.6 445,713 - -1.7 445,713 - -1.3 445,713 - -3.4 445,713 - -1.9 445,829 + -0.1 445,830 - -0.4 445,830 - -0.1 445,897 + +0.1 445,897 + -0.5 445,898 - -0.2 445,898 - -1.5 445,898 - -0.2 445,898 - -0.9 446,416 + RR42_RS01990 0.77 +1.0 446,416 + RR42_RS01990 0.77 -1.1 446,416 + RR42_RS01990 0.77 -1.8 446,416 + RR42_RS01990 0.77 -0.8 446,417 - RR42_RS01990 0.77 +0.3 446,417 - RR42_RS01990 0.77 -2.4 446,570 + +0.6 446,634 + -3.9 446,634 + -0.6 446,640 + +1.1 446,640 + -1.0 446,641 - +0.8 446,641 - +2.2 446,641 - -0.3 446,641 - -0.7 446,697 + +0.2 446,744 + -0.8 446,744 + -0.3 447,242 + -0.6 447,247 + -0.4 447,247 + +1.8 447,247 + +0.1 447,248 - +1.2 447,248 - +0.7
Or see this region's nucleotide sequence