Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01985

Experiment: R2A with nitrate 150 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01980 and RR42_RS01985 are separated by 24 nucleotidesRR42_RS01985 and RR42_RS01990 are separated by 167 nucleotidesRR42_RS01990 and RR42_RS01995 are separated by 217 nucleotides RR42_RS01980: RR42_RS01980 - peptidase M16, at 442,919 to 444,445 _RS01980 RR42_RS01985: RR42_RS01985 - zinc protease, at 444,470 to 445,831 _RS01985 RR42_RS01990: RR42_RS01990 - methyltransferase, at 445,999 to 446,538 _RS01990 RR42_RS01995: RR42_RS01995 - phosphopantetheine adenylyltransferase, at 446,756 to 447,244 _RS01995 Position (kb) 444 445 446Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 443.562 kb on - strand, within RR42_RS01980at 443.585 kb on + strand, within RR42_RS01980at 443.586 kb on - strand, within RR42_RS01980at 443.586 kb on - strand, within RR42_RS01980at 443.586 kb on - strand, within RR42_RS01980at 443.669 kb on + strand, within RR42_RS01980at 443.669 kb on + strand, within RR42_RS01980at 443.681 kb on + strand, within RR42_RS01980at 443.681 kb on + strand, within RR42_RS01980at 443.681 kb on + strand, within RR42_RS01980at 443.681 kb on + strand, within RR42_RS01980at 443.682 kb on - strand, within RR42_RS01980at 443.710 kb on - strand, within RR42_RS01980at 443.759 kb on + strand, within RR42_RS01980at 443.759 kb on + strand, within RR42_RS01980at 443.864 kb on + strand, within RR42_RS01980at 443.864 kb on + strand, within RR42_RS01980at 443.864 kb on + strand, within RR42_RS01980at 443.864 kb on + strand, within RR42_RS01980at 443.865 kb on - strand, within RR42_RS01980at 443.865 kb on - strand, within RR42_RS01980at 443.865 kb on - strand, within RR42_RS01980at 443.865 kb on - strand, within RR42_RS01980at 443.879 kb on + strand, within RR42_RS01980at 443.879 kb on + strand, within RR42_RS01980at 443.879 kb on + strand, within RR42_RS01980at 443.880 kb on - strand, within RR42_RS01980at 443.880 kb on - strand, within RR42_RS01980at 443.960 kb on + strand, within RR42_RS01980at 444.029 kb on + strand, within RR42_RS01980at 444.029 kb on + strand, within RR42_RS01980at 444.030 kb on - strand, within RR42_RS01980at 444.092 kb on - strand, within RR42_RS01980at 444.092 kb on - strand, within RR42_RS01980at 444.092 kb on - strand, within RR42_RS01980at 444.092 kb on - strand, within RR42_RS01980at 444.206 kb on + strand, within RR42_RS01980at 444.206 kb on + strand, within RR42_RS01980at 444.207 kb on - strand, within RR42_RS01980at 444.347 kb on + strandat 444.347 kb on + strandat 444.348 kb on - strandat 444.348 kb on - strandat 444.452 kb on + strandat 444.453 kb on - strandat 444.453 kb on - strandat 444.620 kb on + strand, within RR42_RS01985at 444.621 kb on - strand, within RR42_RS01985at 444.661 kb on + strand, within RR42_RS01985at 444.661 kb on + strand, within RR42_RS01985at 444.686 kb on + strand, within RR42_RS01985at 445.044 kb on - strand, within RR42_RS01985at 445.044 kb on - strand, within RR42_RS01985at 445.313 kb on - strand, within RR42_RS01985at 445.317 kb on + strand, within RR42_RS01985at 445.358 kb on + strand, within RR42_RS01985at 445.358 kb on + strand, within RR42_RS01985at 445.358 kb on + strand, within RR42_RS01985at 445.359 kb on - strand, within RR42_RS01985at 445.359 kb on - strand, within RR42_RS01985at 445.382 kb on + strand, within RR42_RS01985at 445.382 kb on + strand, within RR42_RS01985at 445.382 kb on + strand, within RR42_RS01985at 445.382 kb on + strand, within RR42_RS01985at 445.382 kb on + strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.383 kb on - strand, within RR42_RS01985at 445.452 kb on - strand, within RR42_RS01985at 445.452 kb on - strand, within RR42_RS01985at 445.466 kb on + strand, within RR42_RS01985at 445.466 kb on + strand, within RR42_RS01985at 445.467 kb on - strand, within RR42_RS01985at 445.467 kb on - strand, within RR42_RS01985at 445.572 kb on - strand, within RR42_RS01985at 445.572 kb on - strand, within RR42_RS01985at 445.572 kb on - strand, within RR42_RS01985at 445.572 kb on - strand, within RR42_RS01985at 445.712 kb on + strandat 445.712 kb on + strandat 445.713 kb on - strandat 445.713 kb on - strandat 445.713 kb on - strandat 445.713 kb on - strandat 445.829 kb on + strandat 445.830 kb on - strandat 445.830 kb on - strandat 445.897 kb on + strandat 445.897 kb on + strandat 445.898 kb on - strandat 445.898 kb on - strandat 445.898 kb on - strandat 445.898 kb on - strandat 446.416 kb on + strand, within RR42_RS01990at 446.416 kb on + strand, within RR42_RS01990at 446.416 kb on + strand, within RR42_RS01990at 446.416 kb on + strand, within RR42_RS01990at 446.417 kb on - strand, within RR42_RS01990at 446.417 kb on - strand, within RR42_RS01990at 446.570 kb on + strandat 446.634 kb on + strandat 446.634 kb on + strandat 446.640 kb on + strandat 446.640 kb on + strandat 446.641 kb on - strandat 446.641 kb on - strandat 446.641 kb on - strandat 446.641 kb on - strandat 446.697 kb on + strandat 446.744 kb on + strandat 446.744 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM
remove
443,562 - RR42_RS01980 0.42 -0.8
443,585 + RR42_RS01980 0.44 -3.3
443,586 - RR42_RS01980 0.44 -1.4
443,586 - RR42_RS01980 0.44 -0.8
443,586 - RR42_RS01980 0.44 -2.0
443,669 + RR42_RS01980 0.49 -3.4
443,669 + RR42_RS01980 0.49 -1.9
443,681 + RR42_RS01980 0.50 -0.5
443,681 + RR42_RS01980 0.50 -3.2
443,681 + RR42_RS01980 0.50 -0.9
443,681 + RR42_RS01980 0.50 -0.5
443,682 - RR42_RS01980 0.50 -1.0
443,710 - RR42_RS01980 0.52 +0.0
443,759 + RR42_RS01980 0.55 -1.2
443,759 + RR42_RS01980 0.55 -2.1
443,864 + RR42_RS01980 0.62 -1.8
443,864 + RR42_RS01980 0.62 -4.1
443,864 + RR42_RS01980 0.62 -1.9
443,864 + RR42_RS01980 0.62 -1.2
443,865 - RR42_RS01980 0.62 -0.5
443,865 - RR42_RS01980 0.62 -2.1
443,865 - RR42_RS01980 0.62 -1.4
443,865 - RR42_RS01980 0.62 -1.7
443,879 + RR42_RS01980 0.63 -2.8
443,879 + RR42_RS01980 0.63 -1.8
443,879 + RR42_RS01980 0.63 -2.3
443,880 - RR42_RS01980 0.63 -1.4
443,880 - RR42_RS01980 0.63 -1.9
443,960 + RR42_RS01980 0.68 -2.5
444,029 + RR42_RS01980 0.73 -0.7
444,029 + RR42_RS01980 0.73 -2.1
444,030 - RR42_RS01980 0.73 -1.6
444,092 - RR42_RS01980 0.77 -1.1
444,092 - RR42_RS01980 0.77 -2.8
444,092 - RR42_RS01980 0.77 -2.9
444,092 - RR42_RS01980 0.77 -0.5
444,206 + RR42_RS01980 0.84 -2.2
444,206 + RR42_RS01980 0.84 -1.6
444,207 - RR42_RS01980 0.84 -4.7
444,347 + -1.2
444,347 + -3.7
444,348 - -2.3
444,348 - -3.0
444,452 + +0.3
444,453 - -0.5
444,453 - +0.3
444,620 + RR42_RS01985 0.11 -2.0
444,621 - RR42_RS01985 0.11 -2.1
444,661 + RR42_RS01985 0.14 -0.3
444,661 + RR42_RS01985 0.14 -2.8
444,686 + RR42_RS01985 0.16 +0.6
445,044 - RR42_RS01985 0.42 -3.4
445,044 - RR42_RS01985 0.42 -1.4
445,313 - RR42_RS01985 0.62 -1.4
445,317 + RR42_RS01985 0.62 -3.4
445,358 + RR42_RS01985 0.65 -1.1
445,358 + RR42_RS01985 0.65 -1.6
445,358 + RR42_RS01985 0.65 -2.5
445,359 - RR42_RS01985 0.65 -2.3
445,359 - RR42_RS01985 0.65 -1.9
445,382 + RR42_RS01985 0.67 -2.0
445,382 + RR42_RS01985 0.67 -3.3
445,382 + RR42_RS01985 0.67 -1.0
445,382 + RR42_RS01985 0.67 -1.7
445,382 + RR42_RS01985 0.67 -3.1
445,383 - RR42_RS01985 0.67 -2.3
445,383 - RR42_RS01985 0.67 -1.8
445,383 - RR42_RS01985 0.67 -2.1
445,383 - RR42_RS01985 0.67 -1.9
445,383 - RR42_RS01985 0.67 -1.5
445,383 - RR42_RS01985 0.67 -1.3
445,383 - RR42_RS01985 0.67 -2.5
445,452 - RR42_RS01985 0.72 -3.1
445,452 - RR42_RS01985 0.72 -2.0
445,466 + RR42_RS01985 0.73 -3.4
445,466 + RR42_RS01985 0.73 -3.4
445,467 - RR42_RS01985 0.73 -0.2
445,467 - RR42_RS01985 0.73 -2.3
445,572 - RR42_RS01985 0.81 -2.3
445,572 - RR42_RS01985 0.81 -2.8
445,572 - RR42_RS01985 0.81 -3.2
445,572 - RR42_RS01985 0.81 +0.0
445,712 + -1.2
445,712 + -2.6
445,713 - -1.7
445,713 - -1.3
445,713 - -3.4
445,713 - -1.9
445,829 + -0.1
445,830 - -0.4
445,830 - -0.1
445,897 + +0.1
445,897 + -0.5
445,898 - -0.2
445,898 - -1.5
445,898 - -0.2
445,898 - -0.9
446,416 + RR42_RS01990 0.77 +1.0
446,416 + RR42_RS01990 0.77 -1.1
446,416 + RR42_RS01990 0.77 -1.8
446,416 + RR42_RS01990 0.77 -0.8
446,417 - RR42_RS01990 0.77 +0.3
446,417 - RR42_RS01990 0.77 -2.4
446,570 + +0.6
446,634 + -3.9
446,634 + -0.6
446,640 + +1.1
446,640 + -1.0
446,641 - +0.8
446,641 - +2.2
446,641 - -0.3
446,641 - -0.7
446,697 + +0.2
446,744 + -0.8
446,744 + -0.3

Or see this region's nucleotide sequence