Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01810 and RR42_RS01815 are separated by 15 nucleotides RR42_RS01815 and RR42_RS01820 are separated by 62 nucleotides RR42_RS01820 and RR42_RS01825 are separated by 161 nucleotides
RR42_RS01810: RR42_RS01810 - tRNA 2-selenouridine synthase, at 411,153 to 412,277
_RS01810
RR42_RS01815: RR42_RS01815 - molybdopterin biosynthesis protein MoeB, at 412,293 to 413,060
_RS01815
RR42_RS01820: RR42_RS01820 - peptidase S41, at 413,123 to 414,712
_RS01820
RR42_RS01825: RR42_RS01825 - phosphoglyceromutase, at 414,874 to 415,620
_RS01825
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 412.167 kb on + strand at 412.167 kb on + strand at 412.167 kb on + strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.170 kb on + strand at 412.170 kb on + strand at 412.171 kb on - strand at 412.171 kb on - strand at 412.171 kb on - strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 413.626 kb on - strand, within RR42_RS01820 at 413.626 kb on - strand, within RR42_RS01820 at 413.626 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.632 kb on - strand, within RR42_RS01820 at 413.813 kb on - strand, within RR42_RS01820 at 413.887 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.211 kb on - strand, within RR42_RS01820 at 414.550 kb on - strand, within RR42_RS01820 at 414.550 kb on - strand, within RR42_RS01820 at 414.680 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.793 kb on - strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.794 kb on + strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 414.795 kb on - strand at 415.664 kb on - strand at 415.685 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 412,167 + -0.0 412,167 + -0.8 412,167 + +0.1 412,168 - +0.5 412,168 - +0.7 412,168 - +0.4 412,168 - -0.5 412,168 - -0.6 412,170 + +0.4 412,170 + +0.0 412,171 - +0.3 412,171 - +1.2 412,171 - +0.2 412,182 + +0.8 412,182 + -0.1 412,182 + +0.4 412,182 + +0.5 412,183 - -0.6 412,183 - -0.1 412,183 - +0.3 412,183 - +0.8 412,183 - -0.2 412,183 - +0.9 412,183 - +0.2 413,626 - RR42_RS01820 0.32 -1.1 413,626 - RR42_RS01820 0.32 -0.9 413,626 - RR42_RS01820 0.32 -0.4 413,629 - RR42_RS01820 0.32 -1.3 413,629 - RR42_RS01820 0.32 -1.1 413,629 - RR42_RS01820 0.32 -1.0 413,632 - RR42_RS01820 0.32 -1.4 413,813 - RR42_RS01820 0.43 -2.4 413,887 - RR42_RS01820 0.48 -2.6 414,211 - RR42_RS01820 0.68 -0.8 414,211 - RR42_RS01820 0.68 -2.8 414,211 - RR42_RS01820 0.68 -1.2 414,550 - RR42_RS01820 0.90 -3.2 414,550 - RR42_RS01820 0.90 -1.5 414,680 - -0.6 414,793 - +0.1 414,793 - +0.6 414,793 - -0.7 414,793 - -0.1 414,793 - -0.9 414,794 + +0.1 414,794 + +0.2 414,794 + -0.3 414,794 + -0.2 414,794 + -0.5 414,794 + -0.2 414,794 + -0.5 414,794 + -1.9 414,795 - -0.6 414,795 - +0.2 414,795 - -0.1 414,795 - -0.2 414,795 - -1.2 414,795 - +0.2 414,795 - -0.1 414,795 - +0.1 415,664 - -0.1 415,685 - -0.8
Or see this region's nucleotide sequence