Experiment: R2A with nitrate 150 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01810 and RR42_RS01815 are separated by 15 nucleotides RR42_RS01815 and RR42_RS01820 are separated by 62 nucleotides
RR42_RS01810: RR42_RS01810 - tRNA 2-selenouridine synthase, at 411,153 to 412,277
_RS01810
RR42_RS01815: RR42_RS01815 - molybdopterin biosynthesis protein MoeB, at 412,293 to 413,060
_RS01815
RR42_RS01820: RR42_RS01820 - peptidase S41, at 413,123 to 414,712
_RS01820
Position (kb) 412
413
414 Strain fitness (log2 ratio) -2
-1
0
1 at 411.309 kb on + strand, within RR42_RS01810 at 411.310 kb on - strand, within RR42_RS01810 at 411.310 kb on - strand, within RR42_RS01810 at 411.432 kb on + strand, within RR42_RS01810 at 411.432 kb on + strand, within RR42_RS01810 at 411.432 kb on + strand, within RR42_RS01810 at 411.432 kb on + strand, within RR42_RS01810 at 411.433 kb on - strand, within RR42_RS01810 at 411.536 kb on + strand, within RR42_RS01810 at 411.536 kb on + strand, within RR42_RS01810 at 411.536 kb on + strand, within RR42_RS01810 at 411.537 kb on - strand, within RR42_RS01810 at 411.537 kb on - strand, within RR42_RS01810 at 411.537 kb on - strand, within RR42_RS01810 at 411.537 kb on - strand, within RR42_RS01810 at 411.812 kb on - strand, within RR42_RS01810 at 411.864 kb on + strand, within RR42_RS01810 at 411.864 kb on + strand, within RR42_RS01810 at 411.864 kb on + strand, within RR42_RS01810 at 411.864 kb on + strand, within RR42_RS01810 at 411.942 kb on + strand, within RR42_RS01810 at 411.942 kb on + strand, within RR42_RS01810 at 411.942 kb on + strand, within RR42_RS01810 at 411.942 kb on + strand, within RR42_RS01810 at 411.942 kb on + strand, within RR42_RS01810 at 411.943 kb on - strand, within RR42_RS01810 at 411.943 kb on - strand, within RR42_RS01810 at 411.943 kb on - strand, within RR42_RS01810 at 412.167 kb on + strand at 412.167 kb on + strand at 412.167 kb on + strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.168 kb on - strand at 412.170 kb on + strand at 412.170 kb on + strand at 412.171 kb on - strand at 412.171 kb on - strand at 412.171 kb on - strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.182 kb on + strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 412.183 kb on - strand at 413.626 kb on - strand, within RR42_RS01820 at 413.626 kb on - strand, within RR42_RS01820 at 413.626 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.629 kb on - strand, within RR42_RS01820 at 413.632 kb on - strand, within RR42_RS01820 at 413.813 kb on - strand, within RR42_RS01820 at 413.887 kb on - strand, within RR42_RS01820
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrate 150 mM remove 411,309 + RR42_RS01810 0.14 +0.1 411,310 - RR42_RS01810 0.14 -0.9 411,310 - RR42_RS01810 0.14 -0.2 411,432 + RR42_RS01810 0.25 +0.0 411,432 + RR42_RS01810 0.25 +0.6 411,432 + RR42_RS01810 0.25 -0.2 411,432 + RR42_RS01810 0.25 +0.7 411,433 - RR42_RS01810 0.25 -0.4 411,536 + RR42_RS01810 0.34 -0.0 411,536 + RR42_RS01810 0.34 +0.6 411,536 + RR42_RS01810 0.34 +0.6 411,537 - RR42_RS01810 0.34 -0.0 411,537 - RR42_RS01810 0.34 +0.5 411,537 - RR42_RS01810 0.34 -0.6 411,537 - RR42_RS01810 0.34 -0.4 411,812 - RR42_RS01810 0.59 -0.1 411,864 + RR42_RS01810 0.63 -0.3 411,864 + RR42_RS01810 0.63 -0.3 411,864 + RR42_RS01810 0.63 -0.4 411,864 + RR42_RS01810 0.63 +0.2 411,942 + RR42_RS01810 0.70 -0.7 411,942 + RR42_RS01810 0.70 -0.5 411,942 + RR42_RS01810 0.70 +0.7 411,942 + RR42_RS01810 0.70 -1.1 411,942 + RR42_RS01810 0.70 -0.8 411,943 - RR42_RS01810 0.70 -0.3 411,943 - RR42_RS01810 0.70 -0.3 411,943 - RR42_RS01810 0.70 +0.3 412,167 + -0.0 412,167 + -0.8 412,167 + +0.1 412,168 - +0.5 412,168 - +0.7 412,168 - +0.4 412,168 - -0.5 412,168 - -0.6 412,170 + +0.4 412,170 + +0.0 412,171 - +0.3 412,171 - +1.2 412,171 - +0.2 412,182 + +0.8 412,182 + -0.1 412,182 + +0.4 412,182 + +0.5 412,183 - -0.6 412,183 - -0.1 412,183 - +0.3 412,183 - +0.8 412,183 - -0.2 412,183 - +0.9 412,183 - +0.2 413,626 - RR42_RS01820 0.32 -1.1 413,626 - RR42_RS01820 0.32 -0.9 413,626 - RR42_RS01820 0.32 -0.4 413,629 - RR42_RS01820 0.32 -1.3 413,629 - RR42_RS01820 0.32 -1.1 413,629 - RR42_RS01820 0.32 -1.0 413,632 - RR42_RS01820 0.32 -1.4 413,813 - RR42_RS01820 0.43 -2.4 413,887 - RR42_RS01820 0.48 -2.6
Or see this region's nucleotide sequence