Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_397

Experiment: Chloride 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_396 and Pf6N2E2_397 are separated by 162 nucleotidesPf6N2E2_397 and Pf6N2E2_398 are separated by 209 nucleotidesPf6N2E2_398 and Pf6N2E2_399 overlap by 4 nucleotides Pf6N2E2_396 - hypothetical protein, at 464,513 to 464,920 _396 Pf6N2E2_397 - Large exoproteins involved in heme utilization or adhesion, at 465,083 to 467,020 _397 Pf6N2E2_398 - FIG006045: Sigma factor, ECF subfamily, at 467,230 to 467,736 _398 Pf6N2E2_399 - Iron siderophore sensor protein, at 467,733 to 468,656 _399 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 464.475 kb on + strandat 464.476 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.508 kb on - strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.511 kb on + strandat 464.512 kb on - strandat 464.512 kb on - strandat 464.532 kb on + strandat 464.532 kb on + strandat 464.533 kb on - strandat 464.533 kb on - strandat 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.594 kb on - strand, within Pf6N2E2_396at 464.690 kb on + strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.719 kb on - strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.812 kb on + strand, within Pf6N2E2_396at 464.846 kb on + strand, within Pf6N2E2_396at 464.857 kb on + strand, within Pf6N2E2_396at 464.900 kb on + strandat 464.900 kb on + strandat 464.901 kb on - strandat 464.901 kb on - strandat 464.901 kb on - strandat 464.913 kb on + strandat 464.913 kb on + strandat 464.914 kb on - strandat 464.914 kb on - strandat 464.914 kb on - strandat 464.918 kb on + strandat 464.918 kb on + strandat 464.918 kb on + strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.919 kb on - strandat 464.930 kb on + strandat 465.034 kb on + strandat 465.035 kb on - strandat 465.084 kb on + strandat 465.084 kb on + strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.085 kb on - strandat 465.225 kb on + strandat 465.225 kb on + strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.226 kb on - strandat 465.348 kb on + strand, within Pf6N2E2_397at 465.391 kb on - strand, within Pf6N2E2_397at 465.404 kb on + strand, within Pf6N2E2_397at 465.404 kb on + strand, within Pf6N2E2_397at 465.446 kb on + strand, within Pf6N2E2_397at 465.446 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.473 kb on + strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.474 kb on - strand, within Pf6N2E2_397at 465.551 kb on + strand, within Pf6N2E2_397at 465.552 kb on - strand, within Pf6N2E2_397at 465.691 kb on - strand, within Pf6N2E2_397at 465.820 kb on + strand, within Pf6N2E2_397at 465.843 kb on + strand, within Pf6N2E2_397at 465.874 kb on + strand, within Pf6N2E2_397at 465.875 kb on - strand, within Pf6N2E2_397at 466.014 kb on + strand, within Pf6N2E2_397at 466.014 kb on + strand, within Pf6N2E2_397at 466.014 kb on + strand, within Pf6N2E2_397at 466.015 kb on - strand, within Pf6N2E2_397at 466.015 kb on - strand, within Pf6N2E2_397at 466.017 kb on + strand, within Pf6N2E2_397at 466.018 kb on - strand, within Pf6N2E2_397at 466.089 kb on + strand, within Pf6N2E2_397at 466.146 kb on - strand, within Pf6N2E2_397at 466.418 kb on + strand, within Pf6N2E2_397at 466.419 kb on - strand, within Pf6N2E2_397at 466.419 kb on - strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.551 kb on + strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strandat 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.552 kb on - strand, within Pf6N2E2_397at 466.628 kb on + strand, within Pf6N2E2_397at 466.629 kb on - strand, within Pf6N2E2_397at 466.644 kb on + strand, within Pf6N2E2_397at 466.708 kb on + strand, within Pf6N2E2_397at 466.708 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.749 kb on + strand, within Pf6N2E2_397at 466.750 kb on - strand, within Pf6N2E2_397at 466.750 kb on - strand, within Pf6N2E2_397at 466.834 kb on + strandat 466.835 kb on - strandat 466.936 kb on + strandat 466.937 kb on - strandat 466.938 kb on + strandat 466.939 kb on - strandat 466.939 kb on - strandat 466.939 kb on - strandat 466.954 kb on + strandat 466.955 kb on - strandat 467.084 kb on - strandat 467.087 kb on + strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.088 kb on - strandat 467.108 kb on - strandat 467.486 kb on + strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.487 kb on - strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.683 kb on + strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.684 kb on - strand, within Pf6N2E2_398at 467.685 kb on + strand, within Pf6N2E2_398at 467.902 kb on + strand, within Pf6N2E2_399at 467.903 kb on - strand, within Pf6N2E2_399at 467.903 kb on - strand, within Pf6N2E2_399

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 0.5 M
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464,475 + +0.9
464,476 - -1.2
464,508 - -1.0
464,508 - -1.8
464,508 - -1.3
464,508 - -1.2
464,511 + +0.1
464,511 + -0.8
464,511 + +1.6
464,511 + +0.6
464,512 - -0.3
464,512 - +1.6
464,532 + +0.6
464,532 + +1.2
464,533 - -0.2
464,533 - -0.4
464,594 - Pf6N2E2_396 0.20 -1.4
464,594 - Pf6N2E2_396 0.20 -1.3
464,594 - Pf6N2E2_396 0.20 +0.0
464,690 + Pf6N2E2_396 0.43 -1.3
464,719 - Pf6N2E2_396 0.50 +1.0
464,719 - Pf6N2E2_396 0.50 +0.4
464,812 + Pf6N2E2_396 0.73 -0.7
464,812 + Pf6N2E2_396 0.73 +1.3
464,812 + Pf6N2E2_396 0.73 +0.8
464,846 + Pf6N2E2_396 0.82 -0.6
464,857 + Pf6N2E2_396 0.84 -0.7
464,900 + +0.4
464,900 + -0.1
464,901 - +0.6
464,901 - +0.2
464,901 - -0.5
464,913 + -1.4
464,913 + +0.6
464,914 - +1.1
464,914 - +0.0
464,914 - -2.3
464,918 + +1.2
464,918 + +0.7
464,918 + -0.0
464,919 - -0.0
464,919 - +0.4
464,919 - +0.8
464,919 - +1.0
464,919 - +0.3
464,919 - +0.8
464,919 - +0.2
464,930 + +0.0
465,034 + -1.4
465,035 - -0.4
465,084 + -0.2
465,084 + +2.6
465,085 - -0.9
465,085 - +0.9
465,085 - +0.6
465,085 - +0.7
465,085 - +0.0
465,225 + +0.9
465,225 + +1.3
465,226 - -0.4
465,226 - +0.5
465,226 - +0.7
465,226 - +0.8
465,226 - +0.3
465,226 - +0.8
465,226 - -0.8
465,348 + Pf6N2E2_397 0.14 +0.2
465,391 - Pf6N2E2_397 0.16 +0.0
465,404 + Pf6N2E2_397 0.17 +0.2
465,404 + Pf6N2E2_397 0.17 +0.7
465,446 + Pf6N2E2_397 0.19 -0.7
465,446 + Pf6N2E2_397 0.19 -0.4
465,473 + Pf6N2E2_397 0.20 -0.2
465,473 + Pf6N2E2_397 0.20 +1.1
465,473 + Pf6N2E2_397 0.20 +0.0
465,473 + Pf6N2E2_397 0.20 -0.3
465,474 - Pf6N2E2_397 0.20 -0.2
465,474 - Pf6N2E2_397 0.20 +0.5
465,474 - Pf6N2E2_397 0.20 +0.4
465,474 - Pf6N2E2_397 0.20 -0.1
465,474 - Pf6N2E2_397 0.20 +0.3
465,474 - Pf6N2E2_397 0.20 -0.1
465,474 - Pf6N2E2_397 0.20 -0.7
465,551 + Pf6N2E2_397 0.24 +1.3
465,552 - Pf6N2E2_397 0.24 +1.1
465,691 - Pf6N2E2_397 0.31 +0.1
465,820 + Pf6N2E2_397 0.38 -0.4
465,843 + Pf6N2E2_397 0.39 -1.1
465,874 + Pf6N2E2_397 0.41 -0.4
465,875 - Pf6N2E2_397 0.41 -2.8
466,014 + Pf6N2E2_397 0.48 -2.7
466,014 + Pf6N2E2_397 0.48 -0.5
466,014 + Pf6N2E2_397 0.48 -1.0
466,015 - Pf6N2E2_397 0.48 -1.1
466,015 - Pf6N2E2_397 0.48 +0.7
466,017 + Pf6N2E2_397 0.48 +0.8
466,018 - Pf6N2E2_397 0.48 +1.5
466,089 + Pf6N2E2_397 0.52 +0.4
466,146 - Pf6N2E2_397 0.55 +0.5
466,418 + Pf6N2E2_397 0.69 -0.2
466,419 - Pf6N2E2_397 0.69 -0.3
466,419 - Pf6N2E2_397 0.69 +0.4
466,551 + Pf6N2E2_397 0.76 -0.3
466,551 + Pf6N2E2_397 0.76 +0.0
466,551 + Pf6N2E2_397 0.76 -0.8
466,551 + Pf6N2E2_397 0.76 +1.9
466,551 + Pf6N2E2_397 0.76 -1.4
466,551 + Pf6N2E2_397 0.76 +0.1
466,551 + Pf6N2E2_397 0.76 +0.7
466,551 + Pf6N2E2_397 0.76 +1.1
466,551 + Pf6N2E2_397 0.76 +0.5
466,551 + Pf6N2E2_397 0.76 -0.3
466,551 + Pf6N2E2_397 0.76 -0.4
466,551 + Pf6N2E2_397 0.76 -1.1
466,551 + Pf6N2E2_397 0.76 +0.6
466,551 + Pf6N2E2_397 0.76 +0.0
466,551 + Pf6N2E2_397 0.76 -0.1
466,552 - Pf6N2E2_397 0.76 +1.5
466,552 - Pf6N2E2_397 0.76 -0.0
466,552 - Pf6N2E2_397 0.76 +0.8
466,552 - Pf6N2E2_397 0.76 +1.7
466,552 - Pf6N2E2_397 0.76 -0.9
466,552 - Pf6N2E2_397 0.76 +0.2
466,552 - Pf6N2E2_397 0.76 +1.0
466,552 - Pf6N2E2_397 0.76 -0.7
466,552 - Pf6N2E2_397 0.76 +0.1
466,552 - -0.7
466,552 - Pf6N2E2_397 0.76 -0.6
466,552 - Pf6N2E2_397 0.76 -1.1
466,552 - Pf6N2E2_397 0.76 +0.5
466,552 - Pf6N2E2_397 0.76 +0.3
466,552 - Pf6N2E2_397 0.76 +0.2
466,552 - Pf6N2E2_397 0.76 +0.6
466,552 - Pf6N2E2_397 0.76 +0.3
466,552 - Pf6N2E2_397 0.76 +0.6
466,552 - Pf6N2E2_397 0.76 -1.8
466,552 - Pf6N2E2_397 0.76 -0.4
466,628 + Pf6N2E2_397 0.80 -0.1
466,629 - Pf6N2E2_397 0.80 -0.5
466,644 + Pf6N2E2_397 0.81 -1.0
466,708 + Pf6N2E2_397 0.84 -2.0
466,708 + Pf6N2E2_397 0.84 -1.7
466,749 + Pf6N2E2_397 0.86 +1.2
466,749 + Pf6N2E2_397 0.86 -0.2
466,749 + Pf6N2E2_397 0.86 +2.0
466,750 - Pf6N2E2_397 0.86 -0.4
466,750 - Pf6N2E2_397 0.86 +0.6
466,834 + -0.6
466,835 - +1.6
466,936 + +0.5
466,937 - -1.2
466,938 + +1.0
466,939 - -0.9
466,939 - -0.1
466,939 - -1.7
466,954 + +0.0
466,955 - -0.8
467,084 - +1.4
467,087 + +0.0
467,088 - +0.1
467,088 - -2.8
467,088 - +0.8
467,088 - -1.7
467,088 - +0.4
467,088 - -0.7
467,088 - +1.2
467,108 - -1.0
467,486 + Pf6N2E2_398 0.50 -0.8
467,487 - Pf6N2E2_398 0.51 -1.0
467,487 - Pf6N2E2_398 0.51 +0.4
467,487 - Pf6N2E2_398 0.51 +0.1
467,683 + Pf6N2E2_398 0.89 +0.0
467,683 + Pf6N2E2_398 0.89 +0.2
467,683 + Pf6N2E2_398 0.89 +0.4
467,683 + Pf6N2E2_398 0.89 -0.4
467,683 + Pf6N2E2_398 0.89 -0.1
467,683 + Pf6N2E2_398 0.89 +0.6
467,684 - Pf6N2E2_398 0.90 -0.2
467,684 - Pf6N2E2_398 0.90 -0.4
467,684 - Pf6N2E2_398 0.90 -1.1
467,684 - Pf6N2E2_398 0.90 +1.5
467,685 + Pf6N2E2_398 0.90 +0.7
467,902 + Pf6N2E2_399 0.18 -0.8
467,903 - Pf6N2E2_399 0.18 -1.1
467,903 - Pf6N2E2_399 0.18 +0.2

Or see this region's nucleotide sequence