Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3331

Experiment: Chloride 0.5 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3330 and Pf6N2E2_3331 are separated by 25 nucleotidesPf6N2E2_3331 and Pf6N2E2_3332 are separated by 15 nucleotidesPf6N2E2_3332 and Pf6N2E2_3333 overlap by 4 nucleotides Pf6N2E2_3330 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 3,850,820 to 3,851,536 _3330 Pf6N2E2_3331 - L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) / Osmotic adaptation, at 3,851,562 to 3,852,464 _3331 Pf6N2E2_3332 - L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1), at 3,852,480 to 3,853,133 _3332 Pf6N2E2_3333 - L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1), at 3,853,130 to 3,854,287 _3333 Position (kb) 3851 3852 3853Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3850.634 kb on + strandat 3850.670 kb on + strandat 3850.702 kb on + strandat 3850.702 kb on + strandat 3850.703 kb on - strandat 3850.703 kb on - strandat 3850.906 kb on + strand, within Pf6N2E2_3330at 3850.907 kb on - strand, within Pf6N2E2_3330at 3850.919 kb on + strand, within Pf6N2E2_3330at 3850.919 kb on + strand, within Pf6N2E2_3330at 3850.940 kb on + strand, within Pf6N2E2_3330at 3850.940 kb on + strand, within Pf6N2E2_3330at 3850.940 kb on + strand, within Pf6N2E2_3330at 3850.941 kb on - strand, within Pf6N2E2_3330at 3850.941 kb on - strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.195 kb on + strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.196 kb on - strand, within Pf6N2E2_3330at 3851.534 kb on + strandat 3851.534 kb on + strandat 3851.535 kb on - strandat 3851.535 kb on - strandat 3851.561 kb on + strandat 3851.561 kb on + strandat 3851.581 kb on + strandat 3851.697 kb on + strand, within Pf6N2E2_3331at 3851.698 kb on - strand, within Pf6N2E2_3331at 3851.698 kb on - strand, within Pf6N2E2_3331at 3851.715 kb on + strand, within Pf6N2E2_3331at 3851.715 kb on + strand, within Pf6N2E2_3331at 3851.715 kb on + strand, within Pf6N2E2_3331at 3851.799 kb on + strand, within Pf6N2E2_3331at 3851.823 kb on + strand, within Pf6N2E2_3331at 3851.823 kb on + strand, within Pf6N2E2_3331at 3851.824 kb on - strand, within Pf6N2E2_3331at 3851.862 kb on + strand, within Pf6N2E2_3331at 3851.934 kb on + strand, within Pf6N2E2_3331at 3851.934 kb on + strand, within Pf6N2E2_3331at 3851.934 kb on + strand, within Pf6N2E2_3331at 3851.934 kb on + strand, within Pf6N2E2_3331at 3851.935 kb on - strand, within Pf6N2E2_3331at 3851.935 kb on - strand, within Pf6N2E2_3331at 3851.935 kb on - strand, within Pf6N2E2_3331at 3851.935 kb on - strand, within Pf6N2E2_3331at 3851.935 kb on - strand, within Pf6N2E2_3331at 3852.153 kb on + strand, within Pf6N2E2_3331at 3852.154 kb on - strand, within Pf6N2E2_3331at 3852.195 kb on + strand, within Pf6N2E2_3331at 3852.195 kb on + strand, within Pf6N2E2_3331at 3852.195 kb on + strand, within Pf6N2E2_3331at 3852.195 kb on + strand, within Pf6N2E2_3331at 3852.196 kb on - strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.255 kb on + strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.256 kb on - strand, within Pf6N2E2_3331at 3852.297 kb on + strand, within Pf6N2E2_3331at 3852.298 kb on - strand, within Pf6N2E2_3331at 3852.640 kb on + strand, within Pf6N2E2_3332at 3852.708 kb on + strand, within Pf6N2E2_3332at 3852.708 kb on + strand, within Pf6N2E2_3332at 3852.766 kb on - strand, within Pf6N2E2_3332at 3852.795 kb on + strand, within Pf6N2E2_3332at 3852.795 kb on + strand, within Pf6N2E2_3332at 3852.795 kb on + strand, within Pf6N2E2_3332at 3852.795 kb on + strand, within Pf6N2E2_3332at 3852.795 kb on + strand, within Pf6N2E2_3332at 3852.796 kb on - strand, within Pf6N2E2_3332at 3852.796 kb on - strand, within Pf6N2E2_3332at 3852.796 kb on - strand, within Pf6N2E2_3332at 3853.123 kb on + strandat 3853.123 kb on + strandat 3853.124 kb on - strandat 3853.337 kb on - strand, within Pf6N2E2_3333at 3853.376 kb on + strand, within Pf6N2E2_3333

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 0.5 M
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3,850,634 + +2.9
3,850,670 + -2.3
3,850,702 + -0.3
3,850,702 + -0.3
3,850,703 - -0.6
3,850,703 - -1.4
3,850,906 + Pf6N2E2_3330 0.12 -0.3
3,850,907 - Pf6N2E2_3330 0.12 -1.0
3,850,919 + Pf6N2E2_3330 0.14 -2.4
3,850,919 + Pf6N2E2_3330 0.14 -1.0
3,850,940 + Pf6N2E2_3330 0.17 -0.4
3,850,940 + Pf6N2E2_3330 0.17 -1.3
3,850,940 + Pf6N2E2_3330 0.17 -0.2
3,850,941 - Pf6N2E2_3330 0.17 -1.3
3,850,941 - Pf6N2E2_3330 0.17 -0.7
3,851,195 + Pf6N2E2_3330 0.52 -0.8
3,851,195 + Pf6N2E2_3330 0.52 -0.7
3,851,195 + Pf6N2E2_3330 0.52 -1.4
3,851,195 + Pf6N2E2_3330 0.52 -1.4
3,851,195 + Pf6N2E2_3330 0.52 +0.1
3,851,195 + Pf6N2E2_3330 0.52 -2.9
3,851,196 - Pf6N2E2_3330 0.52 +0.6
3,851,196 - Pf6N2E2_3330 0.52 -1.0
3,851,196 - Pf6N2E2_3330 0.52 -2.1
3,851,196 - Pf6N2E2_3330 0.52 -3.5
3,851,196 - Pf6N2E2_3330 0.52 -1.9
3,851,196 - Pf6N2E2_3330 0.52 -3.1
3,851,196 - Pf6N2E2_3330 0.52 -0.6
3,851,196 - Pf6N2E2_3330 0.52 -0.4
3,851,196 - Pf6N2E2_3330 0.52 -2.3
3,851,196 - Pf6N2E2_3330 0.52 -0.1
3,851,196 - Pf6N2E2_3330 0.52 -0.2
3,851,534 + -2.6
3,851,534 + +0.1
3,851,535 - +0.4
3,851,535 - -1.8
3,851,561 + -0.6
3,851,561 + -0.2
3,851,581 + -2.1
3,851,697 + Pf6N2E2_3331 0.15 -2.4
3,851,698 - Pf6N2E2_3331 0.15 -1.9
3,851,698 - Pf6N2E2_3331 0.15 -1.6
3,851,715 + Pf6N2E2_3331 0.17 -1.9
3,851,715 + Pf6N2E2_3331 0.17 -1.3
3,851,715 + Pf6N2E2_3331 0.17 +0.2
3,851,799 + Pf6N2E2_3331 0.26 -1.7
3,851,823 + Pf6N2E2_3331 0.29 -0.2
3,851,823 + Pf6N2E2_3331 0.29 -2.9
3,851,824 - Pf6N2E2_3331 0.29 +0.6
3,851,862 + Pf6N2E2_3331 0.33 -0.9
3,851,934 + Pf6N2E2_3331 0.41 -1.6
3,851,934 + Pf6N2E2_3331 0.41 -3.2
3,851,934 + Pf6N2E2_3331 0.41 -0.4
3,851,934 + Pf6N2E2_3331 0.41 -2.9
3,851,935 - Pf6N2E2_3331 0.41 -2.0
3,851,935 - Pf6N2E2_3331 0.41 +0.6
3,851,935 - Pf6N2E2_3331 0.41 -3.0
3,851,935 - Pf6N2E2_3331 0.41 -1.1
3,851,935 - Pf6N2E2_3331 0.41 -2.3
3,852,153 + Pf6N2E2_3331 0.65 -0.3
3,852,154 - Pf6N2E2_3331 0.66 -1.6
3,852,195 + Pf6N2E2_3331 0.70 -2.7
3,852,195 + Pf6N2E2_3331 0.70 -1.8
3,852,195 + Pf6N2E2_3331 0.70 -0.1
3,852,195 + Pf6N2E2_3331 0.70 -1.2
3,852,196 - Pf6N2E2_3331 0.70 +0.1
3,852,255 + Pf6N2E2_3331 0.77 +1.3
3,852,255 + Pf6N2E2_3331 0.77 -2.4
3,852,255 + Pf6N2E2_3331 0.77 -1.9
3,852,255 + Pf6N2E2_3331 0.77 -0.1
3,852,255 + Pf6N2E2_3331 0.77 -1.6
3,852,255 + Pf6N2E2_3331 0.77 +0.9
3,852,255 + Pf6N2E2_3331 0.77 -0.2
3,852,255 + Pf6N2E2_3331 0.77 -0.3
3,852,255 + Pf6N2E2_3331 0.77 -0.0
3,852,255 + Pf6N2E2_3331 0.77 -2.4
3,852,256 - Pf6N2E2_3331 0.77 -1.2
3,852,256 - Pf6N2E2_3331 0.77 +1.9
3,852,256 - Pf6N2E2_3331 0.77 -1.2
3,852,256 - Pf6N2E2_3331 0.77 -2.0
3,852,256 - Pf6N2E2_3331 0.77 -0.7
3,852,256 - Pf6N2E2_3331 0.77 -0.7
3,852,297 + Pf6N2E2_3331 0.81 -1.5
3,852,298 - Pf6N2E2_3331 0.82 -0.7
3,852,640 + Pf6N2E2_3332 0.24 -2.6
3,852,708 + Pf6N2E2_3332 0.35 -1.6
3,852,708 + Pf6N2E2_3332 0.35 -3.1
3,852,766 - Pf6N2E2_3332 0.44 -1.4
3,852,795 + Pf6N2E2_3332 0.48 -0.7
3,852,795 + Pf6N2E2_3332 0.48 -2.7
3,852,795 + Pf6N2E2_3332 0.48 -0.7
3,852,795 + Pf6N2E2_3332 0.48 -2.0
3,852,795 + Pf6N2E2_3332 0.48 -0.6
3,852,796 - Pf6N2E2_3332 0.48 -1.2
3,852,796 - Pf6N2E2_3332 0.48 -0.7
3,852,796 - Pf6N2E2_3332 0.48 -0.8
3,853,123 + -1.2
3,853,123 + -2.2
3,853,124 - -1.2
3,853,337 - Pf6N2E2_3333 0.18 -1.1
3,853,376 + Pf6N2E2_3333 0.21 -1.2

Or see this region's nucleotide sequence