Experiment: Chloride 0.5 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1064 and Pf6N2E2_1065 are separated by 161 nucleotides Pf6N2E2_1065 and Pf6N2E2_1066 are separated by 133 nucleotides
Pf6N2E2_1064 - hypothetical protein, at 1,241,020 to 1,242,369
_1064
Pf6N2E2_1065 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 1,242,531 to 1,242,968
_1065
Pf6N2E2_1066 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,243,102 to 1,243,995
_1066
Position (kb)
1242
1243 Strain fitness (log2 ratio)
-2
-1
0
1 at 1241.548 kb on + strand, within Pf6N2E2_1064 at 1241.548 kb on + strand, within Pf6N2E2_1064 at 1241.549 kb on - strand, within Pf6N2E2_1064 at 1241.549 kb on - strand, within Pf6N2E2_1064 at 1241.550 kb on + strand, within Pf6N2E2_1064 at 1241.551 kb on - strand, within Pf6N2E2_1064 at 1241.680 kb on + strand, within Pf6N2E2_1064 at 1241.786 kb on - strand, within Pf6N2E2_1064 at 1241.786 kb on - strand, within Pf6N2E2_1064 at 1241.786 kb on - strand, within Pf6N2E2_1064 at 1241.786 kb on - strand, within Pf6N2E2_1064 at 1241.805 kb on + strand, within Pf6N2E2_1064 at 1242.182 kb on - strand, within Pf6N2E2_1064 at 1242.218 kb on - strand, within Pf6N2E2_1064 at 1242.218 kb on - strand, within Pf6N2E2_1064 at 1242.218 kb on - strand, within Pf6N2E2_1064 at 1242.218 kb on - strand, within Pf6N2E2_1064 at 1242.247 kb on + strand at 1242.248 kb on - strand at 1242.248 kb on - strand at 1242.331 kb on - strand at 1242.335 kb on + strand at 1242.336 kb on - strand at 1242.532 kb on + strand at 1242.532 kb on + strand at 1242.533 kb on - strand at 1242.533 kb on - strand at 1242.603 kb on - strand, within Pf6N2E2_1065 at 1242.623 kb on + strand, within Pf6N2E2_1065 at 1242.624 kb on - strand, within Pf6N2E2_1065 at 1242.624 kb on - strand, within Pf6N2E2_1065 at 1242.818 kb on - strand, within Pf6N2E2_1065 at 1243.071 kb on + strand at 1243.072 kb on - strand at 1243.115 kb on + strand at 1243.116 kb on - strand at 1243.116 kb on - strand at 1243.317 kb on - strand, within Pf6N2E2_1066 at 1243.402 kb on + strand, within Pf6N2E2_1066 at 1243.402 kb on + strand, within Pf6N2E2_1066 at 1243.402 kb on + strand, within Pf6N2E2_1066 at 1243.403 kb on - strand, within Pf6N2E2_1066 at 1243.555 kb on + strand, within Pf6N2E2_1066 at 1243.555 kb on + strand, within Pf6N2E2_1066 at 1243.555 kb on + strand, within Pf6N2E2_1066 at 1243.555 kb on + strand, within Pf6N2E2_1066 at 1243.556 kb on - strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.780 kb on + strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.781 kb on - strand, within Pf6N2E2_1066 at 1243.792 kb on + strand, within Pf6N2E2_1066 at 1243.792 kb on + strand, within Pf6N2E2_1066 at 1243.802 kb on + strand, within Pf6N2E2_1066 at 1243.846 kb on + strand, within Pf6N2E2_1066
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 0.5 M remove 1,241,548 + Pf6N2E2_1064 0.39 -0.2 1,241,548 + Pf6N2E2_1064 0.39 +0.1 1,241,549 - Pf6N2E2_1064 0.39 +1.2 1,241,549 - Pf6N2E2_1064 0.39 -0.4 1,241,550 + Pf6N2E2_1064 0.39 +0.1 1,241,551 - Pf6N2E2_1064 0.39 -1.4 1,241,680 + Pf6N2E2_1064 0.49 +0.6 1,241,786 - Pf6N2E2_1064 0.57 -0.2 1,241,786 - Pf6N2E2_1064 0.57 -0.6 1,241,786 - Pf6N2E2_1064 0.57 -0.8 1,241,786 - Pf6N2E2_1064 0.57 +0.1 1,241,805 + Pf6N2E2_1064 0.58 -1.5 1,242,182 - Pf6N2E2_1064 0.86 -0.2 1,242,218 - Pf6N2E2_1064 0.89 -0.1 1,242,218 - Pf6N2E2_1064 0.89 +0.6 1,242,218 - Pf6N2E2_1064 0.89 -0.2 1,242,218 - Pf6N2E2_1064 0.89 -0.9 1,242,247 + -0.9 1,242,248 - +0.1 1,242,248 - +0.6 1,242,331 - -0.7 1,242,335 + -0.2 1,242,336 - +0.6 1,242,532 + +1.6 1,242,532 + -0.8 1,242,533 - -1.3 1,242,533 - -0.1 1,242,603 - Pf6N2E2_1065 0.16 -1.8 1,242,623 + Pf6N2E2_1065 0.21 -0.5 1,242,624 - Pf6N2E2_1065 0.21 -1.6 1,242,624 - Pf6N2E2_1065 0.21 -1.4 1,242,818 - Pf6N2E2_1065 0.66 -0.2 1,243,071 + +0.5 1,243,072 - -0.4 1,243,115 + +1.2 1,243,116 - +0.9 1,243,116 - +0.5 1,243,317 - Pf6N2E2_1066 0.24 +0.4 1,243,402 + Pf6N2E2_1066 0.34 -0.1 1,243,402 + Pf6N2E2_1066 0.34 +0.3 1,243,402 + Pf6N2E2_1066 0.34 +1.1 1,243,403 - Pf6N2E2_1066 0.34 +0.9 1,243,555 + Pf6N2E2_1066 0.51 +1.0 1,243,555 + Pf6N2E2_1066 0.51 -0.0 1,243,555 + Pf6N2E2_1066 0.51 +0.1 1,243,555 + Pf6N2E2_1066 0.51 +0.4 1,243,556 - Pf6N2E2_1066 0.51 +0.9 1,243,780 + Pf6N2E2_1066 0.76 -1.4 1,243,780 + Pf6N2E2_1066 0.76 +1.1 1,243,780 + Pf6N2E2_1066 0.76 -0.9 1,243,780 + Pf6N2E2_1066 0.76 -0.4 1,243,780 + Pf6N2E2_1066 0.76 -0.8 1,243,780 + Pf6N2E2_1066 0.76 +0.3 1,243,780 + Pf6N2E2_1066 0.76 +0.1 1,243,780 + Pf6N2E2_1066 0.76 +0.2 1,243,780 + Pf6N2E2_1066 0.76 -0.7 1,243,780 + Pf6N2E2_1066 0.76 +1.6 1,243,780 + Pf6N2E2_1066 0.76 -0.7 1,243,780 + Pf6N2E2_1066 0.76 +1.1 1,243,780 + Pf6N2E2_1066 0.76 -0.5 1,243,781 - Pf6N2E2_1066 0.76 +0.8 1,243,781 - Pf6N2E2_1066 0.76 -1.1 1,243,781 - Pf6N2E2_1066 0.76 +1.4 1,243,781 - Pf6N2E2_1066 0.76 -0.4 1,243,781 - Pf6N2E2_1066 0.76 +0.4 1,243,781 - Pf6N2E2_1066 0.76 +0.1 1,243,781 - Pf6N2E2_1066 0.76 -2.0 1,243,781 - Pf6N2E2_1066 0.76 -1.2 1,243,781 - Pf6N2E2_1066 0.76 -0.2 1,243,781 - Pf6N2E2_1066 0.76 -0.5 1,243,781 - Pf6N2E2_1066 0.76 +0.8 1,243,781 - Pf6N2E2_1066 0.76 +0.6 1,243,781 - Pf6N2E2_1066 0.76 -0.9 1,243,781 - Pf6N2E2_1066 0.76 +0.4 1,243,781 - Pf6N2E2_1066 0.76 -1.3 1,243,781 - Pf6N2E2_1066 0.76 +0.1 1,243,781 - Pf6N2E2_1066 0.76 +0.6 1,243,792 + Pf6N2E2_1066 0.77 -0.9 1,243,792 + Pf6N2E2_1066 0.77 +0.1 1,243,802 + Pf6N2E2_1066 0.78 +0.9 1,243,846 + Pf6N2E2_1066 0.83 +0.1
Or see this region's nucleotide sequence