Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23590 and HSERO_RS23595 overlap by 4 nucleotides HSERO_RS23595 and HSERO_RS23600 are separated by 18 nucleotides HSERO_RS23600 and HSERO_RS23605 are separated by 311 nucleotides
HSERO_RS23590: HSERO_RS23590 - amino acid ABC transporter permease, at 5,411,111 to 5,412,241
_RS23590
HSERO_RS23595: HSERO_RS23595 - urea ABC transporter ATP-binding protein, at 5,412,238 to 5,413,107
_RS23595
HSERO_RS23600: HSERO_RS23600 - urea ABC transporter ATP-binding protein, at 5,413,126 to 5,413,824
_RS23600
HSERO_RS23605: HSERO_RS23605 - urease accessory protein UreD, at 5,414,136 to 5,414,999
_RS23605
Position (kb) 5413
5414 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5412.184 kb on - strand at 5412.217 kb on - strand at 5412.281 kb on + strand at 5412.381 kb on - strand, within HSERO_RS23595 at 5412.454 kb on + strand, within HSERO_RS23595 at 5412.527 kb on + strand, within HSERO_RS23595 at 5412.648 kb on - strand, within HSERO_RS23595 at 5412.725 kb on - strand, within HSERO_RS23595 at 5412.917 kb on + strand, within HSERO_RS23595 at 5413.000 kb on - strand, within HSERO_RS23595 at 5413.144 kb on - strand at 5413.152 kb on + strand at 5413.244 kb on + strand, within HSERO_RS23600 at 5413.252 kb on - strand, within HSERO_RS23600 at 5413.284 kb on + strand, within HSERO_RS23600 at 5413.356 kb on - strand, within HSERO_RS23600 at 5413.957 kb on + strand at 5413.957 kb on + strand at 5414.106 kb on - strand at 5414.184 kb on - strand at 5414.227 kb on - strand, within HSERO_RS23605 at 5414.278 kb on - strand, within HSERO_RS23605 at 5414.282 kb on - strand, within HSERO_RS23605 at 5414.419 kb on - strand, within HSERO_RS23605 at 5414.643 kb on - strand, within HSERO_RS23605 at 5414.806 kb on - strand, within HSERO_RS23605
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 5,412,184 - -0.6 5,412,217 - -0.7 5,412,281 + -0.3 5,412,381 - HSERO_RS23595 0.16 -2.0 5,412,454 + HSERO_RS23595 0.25 +0.2 5,412,527 + HSERO_RS23595 0.33 -0.8 5,412,648 - HSERO_RS23595 0.47 +0.6 5,412,725 - HSERO_RS23595 0.56 -0.8 5,412,917 + HSERO_RS23595 0.78 -0.4 5,413,000 - HSERO_RS23595 0.88 +0.3 5,413,144 - +0.2 5,413,152 + +0.1 5,413,244 + HSERO_RS23600 0.17 +1.0 5,413,252 - HSERO_RS23600 0.18 +2.0 5,413,284 + HSERO_RS23600 0.23 +0.2 5,413,356 - HSERO_RS23600 0.33 +0.2 5,413,957 + +0.2 5,413,957 + +1.7 5,414,106 - +1.0 5,414,184 - +0.4 5,414,227 - HSERO_RS23605 0.11 +1.8 5,414,278 - HSERO_RS23605 0.16 +1.2 5,414,282 - HSERO_RS23605 0.17 -1.0 5,414,419 - HSERO_RS23605 0.33 +0.2 5,414,643 - HSERO_RS23605 0.59 -1.0 5,414,806 - HSERO_RS23605 0.78 +0.2
Or see this region's nucleotide sequence