Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS23260 and HSERO_RS23265 overlap by 4 nucleotides HSERO_RS23265 and HSERO_RS23270 overlap by 4 nucleotides HSERO_RS23270 and HSERO_RS23275 are separated by 168 nucleotides
HSERO_RS23260: HSERO_RS23260 - ABC transporter permease, at 5,338,359 to 5,339,363
_RS23260
HSERO_RS23265: HSERO_RS23265 - ABC transporter, at 5,339,360 to 5,340,127
_RS23265
HSERO_RS23270: HSERO_RS23270 - ABC transporter, at 5,340,124 to 5,340,828
_RS23270
HSERO_RS23275: HSERO_RS23275 - allantoate amidohydrolase, at 5,340,997 to 5,342,256
_RS23275
Position (kb) 5339
5340
5341 Strain fitness (log2 ratio) -2
-1
0
1 at 5338.519 kb on + strand, within HSERO_RS23260 at 5338.846 kb on - strand, within HSERO_RS23260 at 5339.064 kb on - strand, within HSERO_RS23260 at 5339.135 kb on + strand, within HSERO_RS23260 at 5339.148 kb on - strand, within HSERO_RS23260 at 5339.446 kb on + strand, within HSERO_RS23265 at 5339.952 kb on + strand, within HSERO_RS23265 at 5339.960 kb on - strand, within HSERO_RS23265 at 5340.054 kb on - strand at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.228 kb on - strand, within HSERO_RS23270 at 5340.253 kb on + strand, within HSERO_RS23270 at 5340.261 kb on - strand, within HSERO_RS23270 at 5340.396 kb on + strand, within HSERO_RS23270 at 5340.657 kb on - strand at 5340.689 kb on + strand, within HSERO_RS23270 at 5340.881 kb on - strand at 5340.897 kb on + strand at 5340.947 kb on - strand at 5341.037 kb on + strand at 5341.058 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 5,338,519 + HSERO_RS23260 0.16 +0.8 5,338,846 - HSERO_RS23260 0.48 -0.2 5,339,064 - HSERO_RS23260 0.70 +0.6 5,339,135 + HSERO_RS23260 0.77 +0.1 5,339,148 - HSERO_RS23260 0.79 +0.4 5,339,446 + HSERO_RS23265 0.11 +0.6 5,339,952 + HSERO_RS23265 0.77 +0.7 5,339,960 - HSERO_RS23265 0.78 +0.4 5,340,054 - +0.5 5,340,228 - HSERO_RS23270 0.15 -0.0 5,340,228 - HSERO_RS23270 0.15 -1.0 5,340,253 + HSERO_RS23270 0.18 -0.0 5,340,261 - HSERO_RS23270 0.19 -2.4 5,340,396 + HSERO_RS23270 0.39 +1.0 5,340,657 - -0.0 5,340,689 + HSERO_RS23270 0.80 -0.2 5,340,881 - +1.5 5,340,897 + +0.2 5,340,947 - +1.0 5,341,037 + +0.6 5,341,058 - +0.3
Or see this region's nucleotide sequence