Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22555 and HSERO_RS22560 are separated by 1 nucleotides HSERO_RS22560 and HSERO_RS22565 are separated by 129 nucleotides HSERO_RS22565 and HSERO_RS22570 are separated by 132 nucleotides HSERO_RS22570 and HSERO_RS22575 are separated by 2 nucleotides
HSERO_RS22555: HSERO_RS22555 - sensor protein, at 5,174,019 to 5,175,047
_RS22555
HSERO_RS22560: HSERO_RS22560 - RNA polymerase sigma factor, at 5,175,049 to 5,175,585
_RS22560
HSERO_RS22565: HSERO_RS22565 - AraC family transcriptional regulator, at 5,175,715 to 5,176,575
_RS22565
HSERO_RS22570: HSERO_RS22570 - DNA-binding protein, at 5,176,708 to 5,177,241
_RS22570
HSERO_RS22575: HSERO_RS22575 - arylesterase, at 5,177,244 to 5,178,071
_RS22575
Position (kb) 5175
5176
5177 Strain fitness (log2 ratio) -1
0
1
2 at 5174.767 kb on - strand at 5174.838 kb on + strand, within HSERO_RS22555 at 5175.019 kb on + strand at 5175.041 kb on + strand at 5175.101 kb on + strand at 5175.114 kb on - strand, within HSERO_RS22560 at 5175.296 kb on - strand, within HSERO_RS22560 at 5175.321 kb on + strand, within HSERO_RS22560 at 5175.321 kb on + strand, within HSERO_RS22560 at 5175.329 kb on - strand, within HSERO_RS22560 at 5175.480 kb on + strand, within HSERO_RS22560 at 5175.480 kb on + strand, within HSERO_RS22560 at 5175.488 kb on - strand, within HSERO_RS22560 at 5175.529 kb on - strand, within HSERO_RS22560 at 5175.655 kb on - strand at 5175.701 kb on + strand at 5175.719 kb on - strand at 5175.773 kb on + strand at 5175.844 kb on - strand, within HSERO_RS22565 at 5175.972 kb on + strand, within HSERO_RS22565 at 5176.150 kb on + strand, within HSERO_RS22565 at 5176.418 kb on + strand, within HSERO_RS22565 at 5176.418 kb on + strand, within HSERO_RS22565 at 5176.760 kb on - strand at 5176.782 kb on + strand, within HSERO_RS22570 at 5176.818 kb on + strand, within HSERO_RS22570 at 5176.818 kb on + strand, within HSERO_RS22570 at 5176.878 kb on + strand, within HSERO_RS22570 at 5177.011 kb on + strand, within HSERO_RS22570 at 5177.257 kb on - strand at 5177.280 kb on - strand at 5177.345 kb on + strand, within HSERO_RS22575 at 5177.381 kb on - strand, within HSERO_RS22575 at 5177.417 kb on - strand, within HSERO_RS22575 at 5177.471 kb on - strand, within HSERO_RS22575 at 5177.496 kb on - strand, within HSERO_RS22575 at 5177.537 kb on + strand, within HSERO_RS22575
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 5,174,767 - -0.1 5,174,838 + HSERO_RS22555 0.80 +0.2 5,175,019 + -0.8 5,175,041 + +0.5 5,175,101 + +0.3 5,175,114 - HSERO_RS22560 0.12 -1.0 5,175,296 - HSERO_RS22560 0.46 +0.7 5,175,321 + HSERO_RS22560 0.51 +0.5 5,175,321 + HSERO_RS22560 0.51 +0.5 5,175,329 - HSERO_RS22560 0.52 -0.2 5,175,480 + HSERO_RS22560 0.80 -0.8 5,175,480 + HSERO_RS22560 0.80 -0.8 5,175,488 - HSERO_RS22560 0.82 +0.1 5,175,529 - HSERO_RS22560 0.89 -0.3 5,175,655 - +0.3 5,175,701 + -0.1 5,175,719 - +0.7 5,175,773 + -0.3 5,175,844 - HSERO_RS22565 0.15 +0.8 5,175,972 + HSERO_RS22565 0.30 -0.1 5,176,150 + HSERO_RS22565 0.51 +1.0 5,176,418 + HSERO_RS22565 0.82 +1.9 5,176,418 + HSERO_RS22565 0.82 +0.7 5,176,760 - +0.5 5,176,782 + HSERO_RS22570 0.14 -0.2 5,176,818 + HSERO_RS22570 0.21 +0.3 5,176,818 + HSERO_RS22570 0.21 -0.2 5,176,878 + HSERO_RS22570 0.32 -0.0 5,177,011 + HSERO_RS22570 0.57 -0.1 5,177,257 - -0.5 5,177,280 - +0.3 5,177,345 + HSERO_RS22575 0.12 +0.0 5,177,381 - HSERO_RS22575 0.17 +0.0 5,177,417 - HSERO_RS22575 0.21 -0.4 5,177,471 - HSERO_RS22575 0.27 +0.1 5,177,496 - HSERO_RS22575 0.30 +0.2 5,177,537 + HSERO_RS22575 0.35 -0.7
Or see this region's nucleotide sequence