Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22525

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
5,166,393	-				+0.6
5,166,420	-				+1.9
5,166,465	+				+0.4
5,166,552	-		HSERO_RS22520	0.20	-0.5
5,166,552	-		HSERO_RS22520	0.20	+0.7
5,166,577	+		HSERO_RS22520	0.24	+0.3
5,166,798	+		HSERO_RS22520	0.63	-0.1
5,166,830	-		HSERO_RS22520	0.68	-1.2
5,166,832	-		HSERO_RS22520	0.69	-0.3
5,166,956	-				+0.4
5,166,970	-				-0.7
5,167,041	+				+0.9
5,167,046	+				+0.2
5,167,046	+				+0.1
5,167,049	-				+1.2
5,167,195	+				+0.5
5,167,407	+		HSERO_RS22525	0.42	+1.4
5,167,448	-		HSERO_RS22525	0.53	-0.0
5,167,657	-				-0.6
5,167,831	+		HSERO_RS22530	0.15	-0.8
5,167,872	-		HSERO_RS22530	0.21	-0.2
5,167,958	-		HSERO_RS22530	0.33	-0.6
5,168,097	-		HSERO_RS22530	0.53	+1.7
5,168,183	-		HSERO_RS22530	0.65	-0.4
5,168,264	-		HSERO_RS22530	0.77	-0.4
5,168,273	+		HSERO_RS22530	0.78	-0.8
5,168,331	+				+0.9
5,168,449	-				+0.1
5,168,456	+				-0.4
5,168,576	+				+0.2
5,168,584	-				+1.0
5,168,584	-				+0.6
5,168,622	+				+0.0
5,168,622	+				-0.7