Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22330

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
5,107,054	-				-0.0
5,107,054	-				+0.2
5,107,103	+				+0.2
5,107,103	+				-0.3
5,107,111	-				-0.6
5,107,165	+				+0.0
5,107,340	+				+0.3
5,107,403	-		HSERO_RS22325	0.25	+0.7
5,107,466	-		HSERO_RS22325	0.52	+0.3
5,107,608	+				-0.1
5,107,663	-				-0.3
5,107,707	-				-0.1
5,107,833	+				+0.9
5,107,855	+				+0.2
5,108,083	-				-0.5
5,108,198	-		HSERO_RS22330	0.21	-0.1
5,108,218	+		HSERO_RS22330	0.24	-0.7
5,108,250	-		HSERO_RS22330	0.29	+0.2
5,108,250	-		HSERO_RS22330	0.29	-0.4
5,108,290	+		HSERO_RS22330	0.34	-0.1
5,108,308	+		HSERO_RS22330	0.37	-0.7
5,108,328	-		HSERO_RS22330	0.40	-0.4
5,108,451	-		HSERO_RS22330	0.57	-0.1
5,108,489	-		HSERO_RS22330	0.63	+0.2
5,108,760	+				+0.2
5,108,760	+				+0.1
5,108,765	+				+0.6
5,108,852	+				+1.4
5,108,888	+				-0.3
5,108,896	-				-0.2
5,108,971	-				-0.0
5,109,138	-		HSERO_RS22335	0.21	+0.0
5,109,167	+		HSERO_RS22335	0.23	-2.8
5,109,270	-		HSERO_RS22335	0.31	-0.7
5,109,363	-		HSERO_RS22335	0.39	+0.4
5,109,363	-		HSERO_RS22335	0.39	+0.1
5,109,490	+		HSERO_RS22335	0.49	+0.2
5,109,517	+		HSERO_RS22335	0.51	+0.6
5,109,603	+				-0.7
5,109,658	+		HSERO_RS22335	0.63	+0.7