Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS22310 and HSERO_RS22315 are separated by 193 nucleotides HSERO_RS22315 and HSERO_RS22320 are separated by 28 nucleotides
HSERO_RS22310: HSERO_RS22310 - LysR family transcriptional regulator, at 5,101,259 to 5,102,158
_RS22310
HSERO_RS22315: HSERO_RS22315 - hypothetical protein, at 5,102,352 to 5,103,296
_RS22315
HSERO_RS22320: HSERO_RS22320 - hypothetical protein, at 5,103,325 to 5,106,597
_RS22320
Position (kb) 5102
5103
5104 Strain fitness (log2 ratio) -1
0
1 at 5101.512 kb on - strand, within HSERO_RS22310 at 5101.758 kb on - strand, within HSERO_RS22310 at 5101.917 kb on + strand, within HSERO_RS22310 at 5102.096 kb on + strand at 5102.324 kb on + strand at 5102.381 kb on + strand at 5102.560 kb on - strand, within HSERO_RS22315 at 5102.614 kb on - strand, within HSERO_RS22315 at 5102.614 kb on - strand, within HSERO_RS22315 at 5102.768 kb on + strand, within HSERO_RS22315 at 5103.119 kb on + strand, within HSERO_RS22315 at 5103.250 kb on - strand at 5103.250 kb on - strand at 5103.250 kb on - strand at 5103.250 kb on - strand at 5103.250 kb on - strand at 5103.323 kb on + strand at 5103.331 kb on - strand at 5103.434 kb on + strand at 5103.438 kb on + strand at 5103.513 kb on + strand at 5103.569 kb on + strand at 5103.603 kb on + strand at 5103.706 kb on + strand, within HSERO_RS22320 at 5103.711 kb on + strand, within HSERO_RS22320 at 5103.721 kb on + strand, within HSERO_RS22320 at 5103.726 kb on + strand, within HSERO_RS22320 at 5103.879 kb on - strand, within HSERO_RS22320 at 5104.031 kb on - strand, within HSERO_RS22320
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 5,101,512 - HSERO_RS22310 0.28 -0.8 5,101,758 - HSERO_RS22310 0.55 -0.1 5,101,917 + HSERO_RS22310 0.73 -0.6 5,102,096 + +0.3 5,102,324 + +0.4 5,102,381 + +0.3 5,102,560 - HSERO_RS22315 0.22 +0.1 5,102,614 - HSERO_RS22315 0.28 +0.7 5,102,614 - HSERO_RS22315 0.28 +0.4 5,102,768 + HSERO_RS22315 0.44 +1.1 5,103,119 + HSERO_RS22315 0.81 +1.2 5,103,250 - +0.9 5,103,250 - -0.1 5,103,250 - -0.2 5,103,250 - +0.4 5,103,250 - +0.1 5,103,323 + +0.2 5,103,331 - -0.3 5,103,434 + +0.1 5,103,438 + +0.9 5,103,513 + +0.8 5,103,569 + +0.1 5,103,603 + +0.3 5,103,706 + HSERO_RS22320 0.12 -0.7 5,103,711 + HSERO_RS22320 0.12 +0.5 5,103,721 + HSERO_RS22320 0.12 -0.5 5,103,726 + HSERO_RS22320 0.12 -0.3 5,103,879 - HSERO_RS22320 0.17 +0.2 5,104,031 - HSERO_RS22320 0.22 +0.5
Or see this region's nucleotide sequence