Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS22215

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
5,078,612	-		HSERO_RS22210	0.11	-0.2
5,078,614	+		HSERO_RS22210	0.11	-0.6
5,078,624	-		HSERO_RS22210	0.12	+0.4
5,078,631	+		HSERO_RS22210	0.13	+0.2
5,078,837	+		HSERO_RS22210	0.33	+0.6
5,078,928	+		HSERO_RS22210	0.42	-0.2
5,078,990	+		HSERO_RS22210	0.48	-0.1
5,079,003	-		HSERO_RS22210	0.49	-1.7
5,079,046	+		HSERO_RS22210	0.53	+0.0
5,079,084	-		HSERO_RS22210	0.57	-0.5
5,079,224	-		HSERO_RS22210	0.71	-0.3
5,079,505	+				+0.3
5,079,818	+		HSERO_RS22215	0.30	+0.6
5,079,825	+		HSERO_RS22215	0.31	-0.3
5,079,826	-		HSERO_RS22215	0.31	+0.5
5,080,019	-		HSERO_RS22215	0.51	+1.9
5,080,441	-				-0.6
5,080,478	+				+0.0
5,080,481	-				+0.5
5,080,685	-				-0.2
5,080,698	+				-0.3
5,080,712	-				-1.8
5,080,769	+				+1.1
5,080,771	+				+0.5
5,080,895	+		HSERO_RS22220	0.17	+0.2
5,080,900	+		HSERO_RS22220	0.18	-0.8
5,081,029	-		HSERO_RS22220	0.26	+0.5
5,081,250	-		HSERO_RS22220	0.41	+0.2
5,081,475	+		HSERO_RS22220	0.56	-0.8
5,081,483	+		HSERO_RS22220	0.56	+0.5