Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21725 and HSERO_RS21730 overlap by 4 nucleotides HSERO_RS21730 and HSERO_RS21735 are separated by 41 nucleotides HSERO_RS21735 and HSERO_RS21740 are separated by 134 nucleotides
HSERO_RS21725: HSERO_RS21725 - polyketide cyclase, at 4,974,984 to 4,975,310
_RS21725
HSERO_RS21730: HSERO_RS21730 - short-chain dehydrogenase, at 4,975,307 to 4,976,089
_RS21730
HSERO_RS21735: HSERO_RS21735 - hypothetical protein, at 4,976,131 to 4,976,415
_RS21735
HSERO_RS21740: HSERO_RS21740 - methionine synthase, at 4,976,550 to 4,980,293
_RS21740
Position (kb) 4976
4977 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4975.147 kb on - strand, within HSERO_RS21725 at 4975.164 kb on + strand, within HSERO_RS21725 at 4975.319 kb on - strand at 4975.332 kb on - strand at 4975.358 kb on + strand at 4975.448 kb on + strand, within HSERO_RS21730 at 4975.602 kb on + strand, within HSERO_RS21730 at 4975.757 kb on + strand, within HSERO_RS21730 at 4975.819 kb on + strand, within HSERO_RS21730 at 4975.878 kb on - strand, within HSERO_RS21730 at 4975.906 kb on + strand, within HSERO_RS21730 at 4976.128 kb on + strand at 4976.136 kb on - strand at 4976.136 kb on - strand at 4976.361 kb on - strand, within HSERO_RS21735 at 4976.380 kb on - strand, within HSERO_RS21735 at 4976.843 kb on + strand at 4977.090 kb on + strand, within HSERO_RS21740 at 4977.187 kb on + strand, within HSERO_RS21740 at 4977.368 kb on + strand, within HSERO_RS21740
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,975,147 - HSERO_RS21725 0.50 -2.2 4,975,164 + HSERO_RS21725 0.55 -0.1 4,975,319 - -0.1 4,975,332 - +0.2 4,975,358 + -0.2 4,975,448 + HSERO_RS21730 0.18 +0.6 4,975,602 + HSERO_RS21730 0.38 -0.0 4,975,757 + HSERO_RS21730 0.57 +0.1 4,975,819 + HSERO_RS21730 0.65 +0.0 4,975,878 - HSERO_RS21730 0.73 -0.5 4,975,906 + HSERO_RS21730 0.77 +0.1 4,976,128 + +0.0 4,976,136 - +1.5 4,976,136 - +0.2 4,976,361 - HSERO_RS21735 0.81 +0.9 4,976,380 - HSERO_RS21735 0.87 +0.1 4,976,843 + -2.4 4,977,090 + HSERO_RS21740 0.14 -1.4 4,977,187 + HSERO_RS21740 0.17 -3.2 4,977,368 + HSERO_RS21740 0.22 -1.1
Or see this region's nucleotide sequence