Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21640

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
4,953,177	-		HSERO_RS21635	0.26	-0.4
4,953,391	+		HSERO_RS21635	0.45	+0.3
4,953,497	-		HSERO_RS21635	0.54	+2.2
4,953,532	-				+1.9
4,953,639	+		HSERO_RS21635	0.66	+2.9
4,953,809	+		HSERO_RS21635	0.81	-0.6
4,954,010	-				+0.3
4,954,011	+				+0.5
4,954,176	-				+0.7
4,954,253	+		HSERO_RS21640	0.11	+0.3
4,954,363	+		HSERO_RS21640	0.23	+0.5
4,954,481	-		HSERO_RS21640	0.36	+1.4
4,954,594	-		HSERO_RS21640	0.48	+0.9
4,955,015	+				+0.4
4,955,086	-				+1.2
4,955,236	+				+0.0
4,955,400	+		HSERO_RS21645	0.21	+0.8
4,955,408	-		HSERO_RS21645	0.21	+0.5
4,955,488	+		HSERO_RS21645	0.28	-0.0
4,955,616	+		HSERO_RS21645	0.39	-0.6
4,955,629	-		HSERO_RS21645	0.40	-0.7
4,956,015	+		HSERO_RS21645	0.72	+0.6
4,956,015	+		HSERO_RS21645	0.72	-0.1
4,956,015	+		HSERO_RS21645	0.72	-0.5