Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21535

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS21530 and HSERO_RS21535 are separated by 183 nucleotidesHSERO_RS21535 and HSERO_RS21540 are separated by 162 nucleotides HSERO_RS21530: HSERO_RS21530 - cytochrome C550, at 4,926,106 to 4,927,260 _RS21530 HSERO_RS21535: HSERO_RS21535 - NADH dehydrogenase, at 4,927,444 to 4,929,045 _RS21535 HSERO_RS21540: HSERO_RS21540 - alkyl hydroperoxide reductase subunit C, at 4,929,208 to 4,929,771 _RS21540 Position (kb) 4927 4928 4929 4930Strain fitness (log2 ratio) -1 0 1at 4926.605 kb on - strand, within HSERO_RS21530at 4926.617 kb on - strand, within HSERO_RS21530at 4926.640 kb on - strand, within HSERO_RS21530at 4926.781 kb on + strand, within HSERO_RS21530at 4926.946 kb on + strand, within HSERO_RS21530at 4927.064 kb on - strand, within HSERO_RS21530at 4927.331 kb on + strandat 4927.331 kb on + strandat 4927.339 kb on - strandat 4927.616 kb on + strand, within HSERO_RS21535at 4927.616 kb on + strand, within HSERO_RS21535at 4927.798 kb on + strand, within HSERO_RS21535at 4927.985 kb on + strand, within HSERO_RS21535at 4928.120 kb on + strand, within HSERO_RS21535at 4928.495 kb on - strand, within HSERO_RS21535at 4928.531 kb on + strand, within HSERO_RS21535at 4928.539 kb on - strand, within HSERO_RS21535at 4928.566 kb on - strand, within HSERO_RS21535at 4928.717 kb on + strand, within HSERO_RS21535at 4928.860 kb on + strand, within HSERO_RS21535at 4929.311 kb on + strand, within HSERO_RS21540at 4929.755 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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4,926,605 - HSERO_RS21530 0.43 +0.0
4,926,617 - HSERO_RS21530 0.44 -0.6
4,926,640 - HSERO_RS21530 0.46 +0.3
4,926,781 + HSERO_RS21530 0.58 +0.2
4,926,946 + HSERO_RS21530 0.73 +0.6
4,927,064 - HSERO_RS21530 0.83 +0.3
4,927,331 + -0.5
4,927,331 + +0.8
4,927,339 - -0.7
4,927,616 + HSERO_RS21535 0.11 -0.7
4,927,616 + HSERO_RS21535 0.11 +0.2
4,927,798 + HSERO_RS21535 0.22 +1.2
4,927,985 + HSERO_RS21535 0.34 -0.1
4,928,120 + HSERO_RS21535 0.42 -0.2
4,928,495 - HSERO_RS21535 0.66 +0.3
4,928,531 + HSERO_RS21535 0.68 +0.2
4,928,539 - HSERO_RS21535 0.68 -0.1
4,928,566 - HSERO_RS21535 0.70 -0.9
4,928,717 + HSERO_RS21535 0.79 +0.5
4,928,860 + HSERO_RS21535 0.88 -0.5
4,929,311 + HSERO_RS21540 0.18 +0.0
4,929,755 - +0.8

Or see this region's nucleotide sequence