Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS21135

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
4,834,732	+				-0.6
4,834,740	-		HSERO_RS21130	0.11	-1.3
4,834,807	+		HSERO_RS21130	0.22	+0.2
4,834,815	-		HSERO_RS21130	0.23	+0.4
4,834,817	+		HSERO_RS21130	0.23	-0.9
4,834,825	-		HSERO_RS21130	0.25	-1.3
4,835,082	+		HSERO_RS21130	0.67	+0.8
4,835,132	-		HSERO_RS21130	0.75	-0.1
4,835,157	-		HSERO_RS21130	0.79	-0.2
4,835,204	+		HSERO_RS21130	0.86	-0.4
4,835,217	-		HSERO_RS21130	0.89	+0.8
4,835,258	-				+0.0
4,835,280	+				+0.1
4,835,280	+				+1.1
4,835,280	+				+0.4
4,835,288	-				+1.1
4,835,372	+				+0.1
4,835,495	-				-0.2
4,835,514	-				-0.1
4,835,563	+				-0.1
4,835,766	+		HSERO_RS21135	0.62	+0.4
4,835,774	-		HSERO_RS21135	0.64	+0.6
4,835,779	-		HSERO_RS21135	0.66	+0.7
4,835,867	-				-0.6
4,835,939	-				+0.2
4,835,970	-				+0.7
4,835,975	-				+0.4
4,836,025	+				+0.4
4,836,063	-				-0.4
4,836,086	+				+0.8
4,836,086	+				-0.1
4,836,094	-				+0.0
4,836,094	-				-0.6
4,836,143	+				-0.1
4,836,171	-				-0.2
4,836,209	+				+0.2
4,836,297	-		HSERO_RS21140	0.19	-1.1
4,836,427	+		HSERO_RS21140	0.35	+0.4
4,836,434	+		HSERO_RS21140	0.36	+0.1
4,836,534	+		HSERO_RS21140	0.48	+0.2
4,836,565	+		HSERO_RS21140	0.52	-0.1
4,836,777	-		HSERO_RS21140	0.78	-0.3
4,836,834	+		HSERO_RS21140	0.85	-0.4