Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS21085 and HSERO_RS21090 overlap by 4 nucleotides HSERO_RS21090 and HSERO_RS21095 overlap by 8 nucleotides HSERO_RS21095 and HSERO_RS21100 overlap by 8 nucleotides
HSERO_RS21085: HSERO_RS21085 - glycosyl transferase family 1, at 4,823,904 to 4,825,127
_RS21085
HSERO_RS21090: HSERO_RS21090 - dTDP-4-dehydrorhamnose reductase, at 4,825,124 to 4,825,981
_RS21090
HSERO_RS21095: HSERO_RS21095 - UDP-glucose 4-epimerase, at 4,825,974 to 4,826,984
_RS21095
HSERO_RS21100: HSERO_RS21100 - UDP-N-acetylglucosamine 2-epimerase, at 4,826,977 to 4,828,107
_RS21100
Position (kb) 4825
4826
4827 Strain fitness (log2 ratio) -1
0
1
2 at 4825.001 kb on + strand, within HSERO_RS21085 at 4825.009 kb on - strand at 4825.009 kb on - strand at 4825.309 kb on - strand, within HSERO_RS21090 at 4825.374 kb on + strand, within HSERO_RS21090 at 4825.517 kb on - strand, within HSERO_RS21090 at 4825.662 kb on - strand, within HSERO_RS21090 at 4825.995 kb on - strand at 4826.256 kb on - strand, within HSERO_RS21095 at 4826.256 kb on - strand, within HSERO_RS21095 at 4826.336 kb on - strand, within HSERO_RS21095 at 4826.344 kb on - strand, within HSERO_RS21095 at 4826.344 kb on - strand, within HSERO_RS21095 at 4826.425 kb on - strand, within HSERO_RS21095 at 4826.516 kb on + strand, within HSERO_RS21095 at 4826.521 kb on + strand, within HSERO_RS21095 at 4826.524 kb on - strand, within HSERO_RS21095 at 4826.613 kb on - strand, within HSERO_RS21095 at 4826.714 kb on + strand, within HSERO_RS21095 at 4826.714 kb on + strand, within HSERO_RS21095 at 4826.747 kb on + strand, within HSERO_RS21095 at 4826.792 kb on + strand, within HSERO_RS21095 at 4826.920 kb on + strand at 4826.923 kb on - strand at 4826.950 kb on + strand at 4827.161 kb on + strand, within HSERO_RS21100 at 4827.186 kb on - strand, within HSERO_RS21100 at 4827.257 kb on - strand, within HSERO_RS21100 at 4827.257 kb on - strand, within HSERO_RS21100 at 4827.257 kb on - strand, within HSERO_RS21100 at 4827.338 kb on + strand, within HSERO_RS21100 at 4827.376 kb on + strand, within HSERO_RS21100 at 4827.376 kb on + strand, within HSERO_RS21100 at 4827.376 kb on + strand, within HSERO_RS21100 at 4827.384 kb on - strand, within HSERO_RS21100 at 4827.401 kb on + strand, within HSERO_RS21100 at 4827.556 kb on - strand, within HSERO_RS21100 at 4827.573 kb on + strand, within HSERO_RS21100 at 4827.646 kb on - strand, within HSERO_RS21100 at 4827.816 kb on - strand, within HSERO_RS21100 at 4827.923 kb on - strand, within HSERO_RS21100
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,825,001 + HSERO_RS21085 0.90 +0.7 4,825,009 - +0.5 4,825,009 - +0.4 4,825,309 - HSERO_RS21090 0.22 +1.4 4,825,374 + HSERO_RS21090 0.29 +1.5 4,825,517 - HSERO_RS21090 0.46 +1.2 4,825,662 - HSERO_RS21090 0.63 +0.9 4,825,995 - -1.6 4,826,256 - HSERO_RS21095 0.28 +0.7 4,826,256 - HSERO_RS21095 0.28 +0.4 4,826,336 - HSERO_RS21095 0.36 +0.6 4,826,344 - HSERO_RS21095 0.37 +0.4 4,826,344 - HSERO_RS21095 0.37 +1.1 4,826,425 - HSERO_RS21095 0.45 +1.5 4,826,516 + HSERO_RS21095 0.54 +0.6 4,826,521 + HSERO_RS21095 0.54 +0.7 4,826,524 - HSERO_RS21095 0.54 +0.1 4,826,613 - HSERO_RS21095 0.63 +0.8 4,826,714 + HSERO_RS21095 0.73 +0.7 4,826,714 + HSERO_RS21095 0.73 -0.4 4,826,747 + HSERO_RS21095 0.76 +1.4 4,826,792 + HSERO_RS21095 0.81 +0.9 4,826,920 + -0.2 4,826,923 - +0.4 4,826,950 + +0.3 4,827,161 + HSERO_RS21100 0.16 +1.6 4,827,186 - HSERO_RS21100 0.18 +2.0 4,827,257 - HSERO_RS21100 0.25 +1.5 4,827,257 - HSERO_RS21100 0.25 +1.3 4,827,257 - HSERO_RS21100 0.25 +0.9 4,827,338 + HSERO_RS21100 0.32 +1.1 4,827,376 + HSERO_RS21100 0.35 +0.7 4,827,376 + HSERO_RS21100 0.35 +0.6 4,827,376 + HSERO_RS21100 0.35 +1.1 4,827,384 - HSERO_RS21100 0.36 +1.5 4,827,401 + HSERO_RS21100 0.37 +1.1 4,827,556 - HSERO_RS21100 0.51 +1.3 4,827,573 + HSERO_RS21100 0.53 +0.6 4,827,646 - HSERO_RS21100 0.59 +1.3 4,827,816 - HSERO_RS21100 0.74 +0.6 4,827,923 - HSERO_RS21100 0.84 +0.2
Or see this region's nucleotide sequence