Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20970

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
4,797,415	-				-0.2
4,797,642	+				-0.4
4,797,718	+				+0.4
4,797,727	-				+0.7
4,797,805	-				+0.7
4,797,807	+				+0.4
4,797,814	-				+1.0
4,797,815	-				+1.3
4,797,893	+				+0.4
4,797,918	-				+0.8
4,798,085	-				+0.3
4,798,164	-				+0.2
4,798,169	-				+1.8
4,798,170	+				+0.6
4,798,183	+				+0.5
4,798,216	+				+0.6
4,798,222	+				+0.8
4,798,222	+				+0.3
4,798,282	-		HSERO_RS20970	0.13	+1.0
4,798,300	-		HSERO_RS20970	0.14	+1.8
4,798,327	+		HSERO_RS20970	0.16	-0.2
4,798,327	+		HSERO_RS20970	0.16	+0.4
4,798,335	-		HSERO_RS20970	0.17	+0.5
4,798,341	+		HSERO_RS20970	0.17	-0.2
4,798,434	-		HSERO_RS20970	0.24	-0.2
4,798,482	+		HSERO_RS20970	0.28	+0.1
4,798,513	-		HSERO_RS20970	0.31	+0.5
4,798,527	+		HSERO_RS20970	0.32	+0.1
4,798,573	+		HSERO_RS20970	0.35	+0.7
4,798,581	-		HSERO_RS20970	0.36	+1.1
4,798,591	-		HSERO_RS20970	0.37	+0.6
4,798,779	-		HSERO_RS20970	0.52	+1.8
4,799,117	+		HSERO_RS20970	0.78	+0.2
4,799,153	+		HSERO_RS20970	0.81	-0.3
4,799,243	+		HSERO_RS20970	0.88	-0.1
4,799,330	+				+0.0
4,799,338	-				+0.6
4,799,591	+				+0.4
4,799,649	-		HSERO_RS20975	0.24	+0.1
4,799,657	+		HSERO_RS20975	0.24	-2.1
4,799,657	+		HSERO_RS20975	0.24	+1.5
4,799,721	+		HSERO_RS20975	0.30	-0.9
4,799,754	+		HSERO_RS20975	0.33	-0.5
4,800,078	-		HSERO_RS20975	0.64	-0.8
4,800,093	-		HSERO_RS20975	0.65	-2.1
4,800,111	-		HSERO_RS20975	0.67	-1.7
4,800,205	-		HSERO_RS20975	0.75	-0.2
4,800,293	+		HSERO_RS20975	0.84	-0.9
4,800,326	-		HSERO_RS20975	0.87	-1.4