Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20655

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
4,734,670	+		HSERO_RS20645	0.70	-2.6
4,734,731	+		HSERO_RS20645	0.74	-3.9
4,734,764	-		HSERO_RS20645	0.76	-1.9
4,734,769	-		HSERO_RS20645	0.77	-3.3
4,734,769	-		HSERO_RS20645	0.77	-5.1
4,734,992	-				-3.3
4,734,997	-				-3.5
4,735,229	-		HSERO_RS20650	0.23	-2.9
4,735,237	+		HSERO_RS20650	0.25	-2.9
4,735,377	+		HSERO_RS20650	0.54	-2.2
4,735,377	+		HSERO_RS20650	0.54	-1.3
4,735,418	+		HSERO_RS20650	0.62	-1.7
4,735,426	-		HSERO_RS20650	0.64	-3.1
4,735,426	-		HSERO_RS20650	0.64	-1.7
4,735,494	-		HSERO_RS20650	0.78	-1.8
4,735,569	+				-1.4
4,735,599	-				-3.9
4,735,623	+				-5.3
4,735,623	+				-3.6
4,735,661	+				-3.7
4,735,840	-		HSERO_RS20655	0.14	-2.1
4,735,847	+		HSERO_RS20655	0.15	-3.0
4,735,923	-		HSERO_RS20655	0.21	-5.6
4,736,210	+		HSERO_RS20655	0.42	-2.7
4,736,211	-		HSERO_RS20655	0.42	-3.6
4,736,364	+		HSERO_RS20655	0.54	-3.8
4,736,364	+		HSERO_RS20655	0.54	-4.7
4,736,370	-		HSERO_RS20655	0.54	-4.1
4,736,372	-		HSERO_RS20655	0.54	-3.1
4,736,372	-				-0.7
4,736,382	-				-2.1
4,736,530	+		HSERO_RS20655	0.66	-4.3
4,736,530	+		HSERO_RS20655	0.66	-3.0
4,736,669	-		HSERO_RS20655	0.76	-3.8
4,736,871	+				-5.8
4,736,928	-				-4.7
4,736,967	+				+1.5
4,737,131	-				-3.2
4,737,159	+		HSERO_RS20660	0.12	-3.6
4,737,173	+		HSERO_RS20660	0.13	-2.6
4,737,288	+		HSERO_RS20660	0.22	-3.7
4,737,296	-		HSERO_RS20660	0.23	-4.4
4,737,381	-		HSERO_RS20660	0.30	-3.1
4,737,405	-		HSERO_RS20660	0.32	-3.1
4,737,457	+		HSERO_RS20660	0.36	-1.9
4,737,516	+		HSERO_RS20660	0.41	-3.7
4,737,572	-		HSERO_RS20660	0.46	-5.6
4,737,598	+		HSERO_RS20660	0.48	-3.2
4,737,727	+		HSERO_RS20660	0.59	-3.7
4,737,793	+		HSERO_RS20660	0.64	-5.3