Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS19545 and HSERO_RS19550 are separated by 197 nucleotides HSERO_RS19550 and HSERO_RS19555 overlap by 4 nucleotides HSERO_RS19555 and HSERO_RS19560 are separated by 54 nucleotides
HSERO_RS19545: HSERO_RS19545 - formamidopyrimidine-DNA glycosylase, at 4,479,457 to 4,480,278
_RS19545
HSERO_RS19550: HSERO_RS19550 - hypothetical protein, at 4,480,476 to 4,482,278
_RS19550
HSERO_RS19555: HSERO_RS19555 - membrane protein, at 4,482,275 to 4,482,907
_RS19555
HSERO_RS19560: HSERO_RS19560 - 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, at 4,482,962 to 4,483,831
_RS19560
Position (kb) 4480
4481
4482
4483 Strain fitness (log2 ratio) -1
0
1 at 4479.547 kb on - strand, within HSERO_RS19545 at 4479.672 kb on - strand at 4479.675 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.876 kb on + strand, within HSERO_RS19545 at 4479.884 kb on - strand, within HSERO_RS19545 at 4479.922 kb on - strand, within HSERO_RS19545 at 4479.937 kb on - strand, within HSERO_RS19545 at 4479.957 kb on + strand, within HSERO_RS19545 at 4480.060 kb on - strand, within HSERO_RS19545 at 4480.083 kb on + strand, within HSERO_RS19545 at 4480.172 kb on + strand, within HSERO_RS19545 at 4480.220 kb on + strand at 4480.221 kb on + strand at 4480.358 kb on + strand at 4480.408 kb on - strand at 4481.435 kb on + strand, within HSERO_RS19550 at 4481.578 kb on + strand, within HSERO_RS19550 at 4481.845 kb on + strand, within HSERO_RS19550 at 4482.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,479,547 - HSERO_RS19545 0.11 -0.4 4,479,672 - +0.9 4,479,675 + HSERO_RS19545 0.27 +0.0 4,479,876 + HSERO_RS19545 0.51 +0.1 4,479,876 + HSERO_RS19545 0.51 +0.0 4,479,876 + HSERO_RS19545 0.51 -0.4 4,479,884 - HSERO_RS19545 0.52 -0.8 4,479,922 - HSERO_RS19545 0.57 +0.2 4,479,937 - HSERO_RS19545 0.58 -0.5 4,479,957 + HSERO_RS19545 0.61 +0.3 4,480,060 - HSERO_RS19545 0.73 -1.0 4,480,083 + HSERO_RS19545 0.76 -0.9 4,480,172 + HSERO_RS19545 0.87 -0.0 4,480,220 + -0.3 4,480,221 + -1.5 4,480,358 + +1.1 4,480,408 - +0.4 4,481,435 + HSERO_RS19550 0.53 +0.6 4,481,578 + HSERO_RS19550 0.61 -0.9 4,481,845 + HSERO_RS19550 0.76 +1.1 4,482,280 - +0.9
Or see this region's nucleotide sequence