Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18960 and HSERO_RS18965 are separated by 29 nucleotides HSERO_RS18965 and HSERO_RS18970 are separated by 48 nucleotides HSERO_RS18970 and HSERO_RS18975 are separated by 38 nucleotides HSERO_RS18975 and HSERO_RS18980 are separated by 283 nucleotides HSERO_RS18980 and HSERO_RS18985 are separated by 35 nucleotides
HSERO_RS18960: HSERO_RS18960 - 4-hydroxybenzoate polyprenyltransferase, at 4,351,672 to 4,352,526
_RS18960
HSERO_RS18965: HSERO_RS18965 - thiopurine S-methyltransferase, at 4,352,556 to 4,353,215
_RS18965
HSERO_RS18970: HSERO_RS18970 - hypothetical protein, at 4,353,264 to 4,353,626
_RS18970
HSERO_RS18975: HSERO_RS18975 - hypothetical protein, at 4,353,665 to 4,353,955
_RS18975
HSERO_RS18980: HSERO_RS18980 - hypothetical protein, at 4,354,239 to 4,354,466
_RS18980
HSERO_RS18985: HSERO_RS18985 - NlpD lipoprotein, at 4,354,502 to 4,355,266
_RS18985
Position (kb) 4353
4354 Strain fitness (log2 ratio) -1
0
1
2 at 4352.928 kb on + strand, within HSERO_RS18965 at 4352.976 kb on + strand, within HSERO_RS18965 at 4353.001 kb on + strand, within HSERO_RS18965 at 4353.304 kb on + strand, within HSERO_RS18970 at 4353.465 kb on - strand, within HSERO_RS18970 at 4353.510 kb on - strand, within HSERO_RS18970 at 4353.545 kb on + strand, within HSERO_RS18970 at 4353.720 kb on + strand, within HSERO_RS18975 at 4353.720 kb on + strand, within HSERO_RS18975 at 4353.928 kb on + strand at 4353.928 kb on + strand at 4353.936 kb on - strand at 4353.936 kb on - strand at 4354.141 kb on + strand at 4354.159 kb on + strand at 4354.237 kb on + strand at 4354.245 kb on - strand at 4354.252 kb on - strand at 4354.272 kb on - strand, within HSERO_RS18980 at 4354.421 kb on - strand, within HSERO_RS18980 at 4354.609 kb on + strand, within HSERO_RS18985
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,352,928 + HSERO_RS18965 0.56 +0.1 4,352,976 + HSERO_RS18965 0.64 +1.9 4,353,001 + HSERO_RS18965 0.67 -0.5 4,353,304 + HSERO_RS18970 0.11 +0.0 4,353,465 - HSERO_RS18970 0.55 +1.2 4,353,510 - HSERO_RS18970 0.68 +0.1 4,353,545 + HSERO_RS18970 0.77 +1.2 4,353,720 + HSERO_RS18975 0.19 -1.1 4,353,720 + HSERO_RS18975 0.19 -0.7 4,353,928 + -0.7 4,353,928 + +0.9 4,353,936 - -1.4 4,353,936 - -0.1 4,354,141 + -0.6 4,354,159 + -0.3 4,354,237 + -0.3 4,354,245 - -0.3 4,354,252 - -0.4 4,354,272 - HSERO_RS18980 0.14 +0.1 4,354,421 - HSERO_RS18980 0.80 -0.5 4,354,609 + HSERO_RS18985 0.14 -0.0
Or see this region's nucleotide sequence