Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18685 and HSERO_RS18690 are separated by 404 nucleotides HSERO_RS18690 and HSERO_RS18695 are separated by 46 nucleotides HSERO_RS18695 and HSERO_RS18700 are separated by 82 nucleotides HSERO_RS18700 and HSERO_RS18705 overlap by 8 nucleotides
HSERO_RS18685: HSERO_RS18685 - hypothetical protein, at 4,289,812 to 4,290,423
_RS18685
HSERO_RS18690: HSERO_RS18690 - short-chain dehydrogenase, at 4,290,828 to 4,291,688
_RS18690
HSERO_RS18695: HSERO_RS18695 - hypothetical protein, at 4,291,735 to 4,292,130
_RS18695
HSERO_RS18700: HSERO_RS18700 - transcriptional regulator, at 4,292,213 to 4,292,572
_RS18700
HSERO_RS18705: HSERO_RS18705 - hypothetical protein, at 4,292,565 to 4,295,045
_RS18705
Position (kb) 4290
4291
4292 Strain fitness (log2 ratio) -1
0
1
2 at 4290.203 kb on - strand, within HSERO_RS18685 at 4290.451 kb on + strand at 4290.469 kb on + strand at 4290.697 kb on - strand at 4290.886 kb on - strand at 4290.906 kb on + strand at 4291.110 kb on - strand, within HSERO_RS18690 at 4291.322 kb on - strand, within HSERO_RS18690 at 4291.457 kb on - strand, within HSERO_RS18690 at 4291.496 kb on + strand, within HSERO_RS18690 at 4291.642 kb on - strand at 4291.742 kb on + strand at 4291.843 kb on - strand, within HSERO_RS18695 at 4291.845 kb on + strand, within HSERO_RS18695 at 4291.855 kb on - strand, within HSERO_RS18695 at 4291.935 kb on - strand, within HSERO_RS18695 at 4292.039 kb on - strand, within HSERO_RS18695 at 4292.115 kb on + strand at 4292.118 kb on - strand at 4292.118 kb on - strand at 4292.187 kb on + strand at 4292.347 kb on - strand, within HSERO_RS18700 at 4292.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,290,203 - HSERO_RS18685 0.64 -0.1 4,290,451 + +0.4 4,290,469 + -0.6 4,290,697 - -0.9 4,290,886 - +1.6 4,290,906 + +0.5 4,291,110 - HSERO_RS18690 0.33 +0.8 4,291,322 - HSERO_RS18690 0.57 -0.7 4,291,457 - HSERO_RS18690 0.73 +0.2 4,291,496 + HSERO_RS18690 0.78 +1.9 4,291,642 - -0.1 4,291,742 + -0.3 4,291,843 - HSERO_RS18695 0.27 +0.9 4,291,845 + HSERO_RS18695 0.28 -0.2 4,291,855 - HSERO_RS18695 0.30 +0.2 4,291,935 - HSERO_RS18695 0.51 -0.1 4,292,039 - HSERO_RS18695 0.77 +0.7 4,292,115 + -0.5 4,292,118 - -0.1 4,292,118 - -0.8 4,292,187 + +0.1 4,292,347 - HSERO_RS18700 0.37 +0.1 4,292,674 + -0.7
Or see this region's nucleotide sequence