Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18210 and HSERO_RS18215 overlap by 1 nucleotides HSERO_RS18215 and HSERO_RS18220 overlap by 4 nucleotides HSERO_RS18220 and HSERO_RS18225 are separated by 29 nucleotides HSERO_RS18225 and HSERO_RS18230 are separated by 4 nucleotides
HSERO_RS18210: HSERO_RS18210 - hypothetical protein, at 4,183,489 to 4,184,001
_RS18210
HSERO_RS18215: HSERO_RS18215 - Tfp pilus assembly transmembrane PilW protein, at 4,184,001 to 4,184,885
_RS18215
HSERO_RS18220: HSERO_RS18220 - pilus assembly protein, at 4,184,882 to 4,185,487
_RS18220
HSERO_RS18225: HSERO_RS18225 - pilus assembly protein, at 4,185,517 to 4,185,972
_RS18225
HSERO_RS18230: HSERO_RS18230 - pilus assembly protein, at 4,185,977 to 4,186,450
_RS18230
Position (kb) 4184
4185
4186 Strain fitness (log2 ratio) -1
0
1 at 4184.227 kb on - strand, within HSERO_RS18215 at 4184.269 kb on + strand, within HSERO_RS18215 at 4184.365 kb on + strand, within HSERO_RS18215 at 4184.380 kb on + strand, within HSERO_RS18215 at 4184.405 kb on + strand, within HSERO_RS18215 at 4184.480 kb on - strand, within HSERO_RS18215 at 4184.665 kb on + strand, within HSERO_RS18215 at 4184.754 kb on - strand, within HSERO_RS18215 at 4184.866 kb on + strand at 4184.945 kb on - strand, within HSERO_RS18220 at 4185.060 kb on + strand, within HSERO_RS18220 at 4185.127 kb on + strand, within HSERO_RS18220 at 4185.370 kb on - strand, within HSERO_RS18220 at 4185.545 kb on + strand at 4185.553 kb on - strand at 4185.646 kb on + strand, within HSERO_RS18225 at 4185.666 kb on + strand, within HSERO_RS18225 at 4185.669 kb on - strand, within HSERO_RS18225 at 4185.707 kb on - strand, within HSERO_RS18225 at 4185.787 kb on + strand, within HSERO_RS18225 at 4185.795 kb on - strand, within HSERO_RS18225 at 4185.795 kb on - strand, within HSERO_RS18225 at 4186.077 kb on - strand, within HSERO_RS18230 at 4186.084 kb on - strand, within HSERO_RS18230 at 4186.292 kb on + strand, within HSERO_RS18230 at 4186.399 kb on + strand, within HSERO_RS18230 at 4186.429 kb on - strand at 4186.485 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,184,227 - HSERO_RS18215 0.26 -0.5 4,184,269 + HSERO_RS18215 0.30 -0.2 4,184,365 + HSERO_RS18215 0.41 +0.0 4,184,380 + HSERO_RS18215 0.43 -1.1 4,184,405 + HSERO_RS18215 0.46 +0.3 4,184,480 - HSERO_RS18215 0.54 +0.3 4,184,665 + HSERO_RS18215 0.75 -0.0 4,184,754 - HSERO_RS18215 0.85 -0.3 4,184,866 + +0.5 4,184,945 - HSERO_RS18220 0.10 +0.5 4,185,060 + HSERO_RS18220 0.29 +0.6 4,185,127 + HSERO_RS18220 0.40 +0.4 4,185,370 - HSERO_RS18220 0.81 +0.4 4,185,545 + -0.6 4,185,553 - +0.3 4,185,646 + HSERO_RS18225 0.28 -0.5 4,185,666 + HSERO_RS18225 0.33 -0.1 4,185,669 - HSERO_RS18225 0.33 -1.0 4,185,707 - HSERO_RS18225 0.42 +0.7 4,185,787 + HSERO_RS18225 0.59 +0.3 4,185,795 - HSERO_RS18225 0.61 -0.2 4,185,795 - HSERO_RS18225 0.61 +0.2 4,186,077 - HSERO_RS18230 0.21 +0.1 4,186,084 - HSERO_RS18230 0.23 -0.5 4,186,292 + HSERO_RS18230 0.66 +0.4 4,186,399 + HSERO_RS18230 0.89 -0.1 4,186,429 - +0.1 4,186,485 - -0.2
Or see this region's nucleotide sequence