Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS17765 and HSERO_RS17770 overlap by 1 nucleotides HSERO_RS17770 and HSERO_RS17775 are separated by 4 nucleotides HSERO_RS17775 and HSERO_RS17780 overlap by 1 nucleotides
HSERO_RS17765: HSERO_RS17765 - coproporphyrinogen III oxidase, at 4,082,351 to 4,083,271
_RS17765
HSERO_RS17770: HSERO_RS17770 - nicotinate-nucleotide adenylyltransferase, at 4,083,271 to 4,083,936
_RS17770
HSERO_RS17775: HSERO_RS17775 - hypothetical protein, at 4,083,941 to 4,084,711
_RS17775
HSERO_RS17780: HSERO_RS17780 - 50S rRNA methyltransferase, at 4,084,711 to 4,085,181
_RS17780
Position (kb) 4083
4084 Strain fitness (log2 ratio) -1
0
1 at 4082.300 kb on - strand at 4082.389 kb on + strand at 4083.291 kb on + strand at 4083.543 kb on - strand, within HSERO_RS17770 at 4083.606 kb on - strand, within HSERO_RS17770 at 4083.672 kb on + strand, within HSERO_RS17770 at 4083.750 kb on + strand, within HSERO_RS17770 at 4083.795 kb on + strand, within HSERO_RS17770 at 4083.888 kb on + strand at 4084.204 kb on - strand, within HSERO_RS17775 at 4084.902 kb on + strand, within HSERO_RS17780 at 4084.910 kb on - strand, within HSERO_RS17780 at 4084.910 kb on - strand, within HSERO_RS17780 at 4084.910 kb on - strand, within HSERO_RS17780 at 4084.929 kb on + strand, within HSERO_RS17780
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM remove 4,082,300 - +0.4 4,082,389 + -0.1 4,083,291 + -0.6 4,083,543 - HSERO_RS17770 0.41 -1.2 4,083,606 - HSERO_RS17770 0.50 -1.6 4,083,672 + HSERO_RS17770 0.60 -1.3 4,083,750 + HSERO_RS17770 0.72 -0.1 4,083,795 + HSERO_RS17770 0.79 -1.0 4,083,888 + -0.0 4,084,204 - HSERO_RS17775 0.34 -0.5 4,084,902 + HSERO_RS17780 0.41 +0.0 4,084,910 - HSERO_RS17780 0.42 +0.1 4,084,910 - HSERO_RS17780 0.42 -0.1 4,084,910 - HSERO_RS17780 0.42 +0.5 4,084,929 + HSERO_RS17780 0.46 -1.5
Or see this region's nucleotide sequence