Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16860

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,857,822	-		HSERO_RS16850	0.87	-0.9
3,857,970	-				-0.0
3,858,167	-		HSERO_RS16855	0.29	+0.4
3,858,289	+		HSERO_RS16855	0.44	+0.6
3,858,289	+		HSERO_RS16855	0.44	-1.0
3,858,409	-		HSERO_RS16855	0.58	+0.7
3,858,450	-		HSERO_RS16855	0.62	+0.3
3,858,452	+				+0.8
3,858,462	+		HSERO_RS16855	0.64	-0.1
3,858,781	+				+0.0
3,858,876	+		HSERO_RS16860	0.19	+0.5
3,858,879	-		HSERO_RS16860	0.20	+1.5
3,859,057	-		HSERO_RS16860	0.53	+0.7
3,859,106	+		HSERO_RS16860	0.62	-0.7
3,859,308	-				-0.3
3,859,357	-				+1.1
3,859,357	-				+0.6
3,859,444	+		HSERO_RS16865	0.32	-0.1
3,859,636	+				-0.0
3,859,709	-				+0.1
3,859,930	-		HSERO_RS16870	0.22	+0.0
3,860,017	-		HSERO_RS16870	0.28	+0.0
3,860,017	-		HSERO_RS16870	0.28	-0.0
3,860,028	+				-1.0
3,860,028	+		HSERO_RS16870	0.29	-0.6
3,860,234	+		HSERO_RS16870	0.43	+0.2
3,860,261	-		HSERO_RS16870	0.45	-0.7