Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16420

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,757,551	+				-0.2
3,757,609	+				+0.1
3,757,628	+				+0.3
3,757,633	+				-0.1
3,757,838	-		HSERO_RS16415	0.32	+0.2
3,757,852	-		HSERO_RS16415	0.33	+0.8
3,757,897	-		HSERO_RS16415	0.38	-0.3
3,757,916	-		HSERO_RS16415	0.41	-0.2
3,757,938	+		HSERO_RS16415	0.43	-0.9
3,757,946	-		HSERO_RS16415	0.44	-1.2
3,757,947	-		HSERO_RS16415	0.44	+0.5
3,757,951	+		HSERO_RS16415	0.45	+0.1
3,757,951	+		HSERO_RS16415	0.45	-0.3
3,758,033	+		HSERO_RS16415	0.54	-0.4
3,758,033	+		HSERO_RS16415	0.54	+0.3
3,758,043	-		HSERO_RS16415	0.55	-0.4
3,758,219	-		HSERO_RS16415	0.75	+0.7
3,758,949	+		HSERO_RS16420	0.53	+0.9
3,759,076	-		HSERO_RS16420	0.68	+0.1
3,759,126	+		HSERO_RS16420	0.74	+0.8
3,759,259	-		HSERO_RS16420	0.90	+0.7
3,759,341	+				+1.7
3,759,341	+				+1.2
3,759,349	-				+0.2
3,759,349	-				-0.4
3,759,349	-				-1.7
3,759,777	+		HSERO_RS16425	0.36	-0.3
3,759,834	+		HSERO_RS16425	0.43	+0.9
3,759,872	+		HSERO_RS16425	0.47	+0.1
3,759,880	-		HSERO_RS16425	0.48	+0.5
3,759,947	+		HSERO_RS16425	0.55	-0.6
3,759,961	+		HSERO_RS16425	0.57	-0.0
3,760,142	+		HSERO_RS16425	0.77	+0.1
3,760,182	+		HSERO_RS16425	0.81	-0.8
3,760,198	+		HSERO_RS16425	0.83	+0.1
3,760,248	+		HSERO_RS16425	0.88	+0.2