Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16340

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,738,465	+		HSERO_RS16335	0.30	-0.0
3,738,523	+		HSERO_RS16335	0.35	-0.7
3,738,750	+		HSERO_RS16335	0.52	-0.9
3,738,753	-		HSERO_RS16335	0.53	+0.5
3,738,753	-		HSERO_RS16335	0.53	+0.1
3,738,773	-				-0.7
3,738,800	+		HSERO_RS16335	0.56	+0.2
3,738,813	-		HSERO_RS16335	0.57	+0.4
3,738,848	-		HSERO_RS16335	0.60	+0.1
3,738,949	-		HSERO_RS16335	0.68	+1.9
3,739,015	+		HSERO_RS16335	0.73	-0.3
3,739,186	+		HSERO_RS16335	0.86	+0.0
3,739,336	+				-0.5
3,739,406	+				-0.6
3,739,577	+		HSERO_RS16340	0.28	-0.2
3,739,585	-		HSERO_RS16340	0.29	-1.9
3,739,605	-		HSERO_RS16340	0.33	-0.3
3,739,664	+		HSERO_RS16340	0.42	-2.0
3,739,665	+		HSERO_RS16340	0.43	-2.2
3,739,793	+		HSERO_RS16340	0.64	-1.3
3,739,795	+		HSERO_RS16340	0.64	-1.4
3,739,857	-		HSERO_RS16340	0.74	-1.8
3,739,873	+		HSERO_RS16340	0.77	-2.2
3,740,023	+				-0.0
3,740,244	-				+0.6
3,740,266	+				-0.5
3,740,279	-				+0.2
3,740,328	+				+1.0
3,740,328	+				+0.9
3,740,333	+				-0.1
3,740,468	-				-0.5
3,740,503	-				-0.1
3,740,572	-		HSERO_RS16345	0.14	-0.2
3,740,656	+		HSERO_RS16345	0.20	-0.2
3,740,778	+				-0.7
3,740,859	+		HSERO_RS16345	0.34	+1.3
3,740,869	+		HSERO_RS16345	0.35	+0.3
3,740,885	+		HSERO_RS16345	0.36	-0.5
3,740,885	+		HSERO_RS16345	0.36	-0.4
3,740,885	+		HSERO_RS16345	0.36	+0.2
3,740,893	-		HSERO_RS16345	0.37	-0.0
3,740,946	-		HSERO_RS16345	0.41	+0.1
3,740,946	-		HSERO_RS16345	0.41	-0.2
3,741,007	-		HSERO_RS16345	0.45	+0.5