Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16275

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,717,744	+		HSERO_RS16270	0.73	+0.0
3,717,752	-		HSERO_RS16270	0.73	+0.2
3,717,854	+		HSERO_RS16270	0.79	+0.2
3,717,858	-		HSERO_RS16270	0.80	-0.0
3,718,079	-				+0.5
3,718,079	-				-0.1
3,718,191	-				+0.5
3,718,258	+				+0.3
3,718,280	-				-0.3
3,718,292	+				+0.0
3,718,483	+				-0.2
3,718,485	+				+0.3
3,718,991	+		HSERO_RS16275	0.71	+0.5
3,719,196	-				-0.2
3,719,209	+				+0.2
3,719,223	+				-1.1
3,719,231	-				+0.8
3,719,247	+				-0.2
3,719,441	+				+0.4
3,719,590	+				+0.4
3,719,660	+				+0.3
3,719,660	+				+0.9
3,719,843	-		HSERO_RS16280	0.13	+0.1
3,719,867	+		HSERO_RS16280	0.14	+0.1
3,719,901	-		HSERO_RS16280	0.15	-0.4
3,719,910	+		HSERO_RS16280	0.16	+0.6
3,719,975	-		HSERO_RS16280	0.19	-0.0
3,720,044	+		HSERO_RS16280	0.22	+1.1