Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15865

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,622,100	+		HSERO_RS15860	0.20	-0.6
3,622,108	-				-2.1
3,622,111	+		HSERO_RS15860	0.21	-0.0
3,622,131	+		HSERO_RS15860	0.23	-0.2
3,622,181	-		HSERO_RS15860	0.28	-0.4
3,622,186	+		HSERO_RS15860	0.29	-0.1
3,622,541	+		HSERO_RS15860	0.67	-0.6
3,622,620	+		HSERO_RS15860	0.75	-0.3
3,622,987	+				-0.3
3,623,034	+				-1.3
3,623,079	+				-0.5
3,623,182	+		HSERO_RS15865	0.28	-1.1
3,623,224	+		HSERO_RS15865	0.42	-0.3
3,623,231	-		HSERO_RS15865	0.44	+0.5
3,623,378	-				-0.3
3,623,402	+				-0.6
3,623,402	-				+0.4
3,623,410	-				-0.4
3,623,438	-				-0.7
3,623,536	+				-0.3
3,623,544	-				-0.0
3,623,565	+				-0.0
3,623,565	+				-0.3
3,623,573	-				-0.5
3,623,646	-		HSERO_RS15870	0.17	-1.1
3,623,671	-		HSERO_RS15870	0.20	-0.3
3,623,771	-		HSERO_RS15870	0.30	-0.1
3,623,941	-		HSERO_RS15870	0.48	-1.3
3,623,974	-		HSERO_RS15870	0.52	-1.1
3,624,026	+				+0.3
3,624,043	+		HSERO_RS15870	0.59	+0.9
3,624,215	-		HSERO_RS15870	0.78	-0.4
3,624,258	-		HSERO_RS15870	0.82	-0.8