Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15015

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,408,472	-				-0.7
3,408,472	-				-0.5
3,408,530	+				+0.5
3,408,561	+				+0.5
3,408,607	-				+0.2
3,408,630	+		HSERO_RS15010	0.12	+0.3
3,408,675	-		HSERO_RS15010	0.17	+1.3
3,408,707	+		HSERO_RS15010	0.21	-0.2
3,408,723	-		HSERO_RS15010	0.23	-0.0
3,408,851	+		HSERO_RS15010	0.37	+0.1
3,408,851	+		HSERO_RS15010	0.37	-0.3
3,408,862	+		HSERO_RS15010	0.39	-1.2
3,408,927	+		HSERO_RS15010	0.46	+0.8
3,409,150	-		HSERO_RS15010	0.72	+0.5
3,409,189	-		HSERO_RS15010	0.76	-1.0
3,409,259	+		HSERO_RS15010	0.84	+0.4
3,409,262	-		HSERO_RS15010	0.85	+0.2
3,409,267	-		HSERO_RS15010	0.85	+0.4
3,409,267	-		HSERO_RS15010	0.85	-0.2
3,409,283	-		HSERO_RS15010	0.87	+0.2
3,409,320	-				+0.4
3,409,342	+				+1.4
3,409,375	+				-0.0
3,409,391	+				-0.6
3,409,452	-				-0.6
3,409,452	-				+0.8
3,409,485	+				-0.1
3,409,620	-		HSERO_RS15015	0.29	-0.2
3,409,664	+		HSERO_RS15015	0.36	-0.2
3,409,731	+		HSERO_RS15015	0.46	-0.0
3,409,938	+		HSERO_RS15015	0.76	-0.2
3,409,951	-		HSERO_RS15015	0.78	-0.1
3,410,022	+		HSERO_RS15015	0.89	-0.4
3,410,185	-		HSERO_RS15020	0.11	-0.3
3,410,245	-		HSERO_RS15020	0.21	-0.5
3,410,264	-		HSERO_RS15020	0.24	+0.0
3,410,302	+		HSERO_RS15020	0.30	-0.9
3,410,409	-		HSERO_RS15020	0.47	-0.2
3,410,473	+		HSERO_RS15020	0.57	+0.5
3,410,483	+				-1.7
3,410,491	-		HSERO_RS15020	0.60	+0.0
3,410,504	+		HSERO_RS15020	0.62	-0.2
3,410,504	+		HSERO_RS15020	0.62	+0.0
3,410,512	-		HSERO_RS15020	0.64	-0.1
3,410,578	+		HSERO_RS15020	0.74	-0.8
3,410,633	+		HSERO_RS15020	0.83	-0.4
3,410,642	+		HSERO_RS15020	0.84	+0.5
3,410,642	+		HSERO_RS15020	0.84	-0.9
3,410,749	-				+0.5
3,410,831	+				-0.4
3,410,866	+				+1.2
3,410,866	+				+0.8
3,410,989	+		HSERO_RS15025	0.16	-1.3
3,410,999	-		HSERO_RS15025	0.17	-2.0
3,411,011	+		HSERO_RS15025	0.19	+0.4
3,411,015	+		HSERO_RS15025	0.19	-1.2
3,411,024	-		HSERO_RS15025	0.20	-0.4