Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS14765
Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Phenylacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
3,351,334 | - | -0.2 | |||
3,351,662 | + | HSERO_RS14760 | 0.27 | +0.7 | |
3,351,892 | - | HSERO_RS14760 | 0.53 | +0.7 | |
3,351,902 | - | HSERO_RS14760 | 0.54 | +0.3 | |
3,352,189 | - | HSERO_RS14760 | 0.86 | +0.4 | |
3,353,241 | + | HSERO_RS14765 | 0.69 | +1.3 | |
3,353,391 | - | HSERO_RS14765 | 0.80 | +0.3 | |
3,353,751 | + | +0.9 | |||
3,354,025 | - | HSERO_RS14770 | 0.24 | +0.3 | |
3,354,243 | + | HSERO_RS14770 | 0.44 | +1.9 | |
3,354,368 | - | HSERO_RS14770 | 0.55 | -0.3 | |
3,354,448 | + | HSERO_RS14770 | 0.62 | -0.9 | |
3,354,448 | + | HSERO_RS14770 | 0.62 | -0.0 | |
3,354,580 | + | HSERO_RS14770 | 0.74 | +1.7 |
Or see this region's nucleotide sequence