Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13645

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,097,399	-		HSERO_RS13635	0.65	-0.5
3,097,409	-		HSERO_RS13635	0.66	+0.9
3,097,424	-		HSERO_RS13635	0.68	+0.1
3,097,439	+				+1.3
3,097,524	+		HSERO_RS13635	0.77	+0.2
3,097,529	-		HSERO_RS13635	0.78	-0.1
3,097,673	+				+0.1
3,097,746	+				-0.1
3,097,906	-		HSERO_RS13640	0.12	-0.3
3,098,159	+		HSERO_RS13640	0.87	+1.1
3,098,169	+		HSERO_RS13640	0.90	+0.1
3,098,280	+				+0.1
3,098,525	-		HSERO_RS13645	0.11	+0.6
3,098,695	+		HSERO_RS13645	0.24	+1.0
3,098,991	+				-0.2
3,099,222	-		HSERO_RS13645	0.63	+0.7
3,099,284	+		HSERO_RS13645	0.68	+0.7
3,099,505	+		HSERO_RS13645	0.84	+0.5
3,099,592	-				+1.1
3,099,826	+				+0.6
3,099,844	-				+0.0
3,099,844	-				-0.6
3,099,918	+		HSERO_RS13650	0.17	+0.9
3,100,158	+		HSERO_RS13650	0.44	+0.7
3,100,212	+		HSERO_RS13650	0.50	+1.2
3,100,317	-		HSERO_RS13650	0.62	+0.9
3,100,323	+		HSERO_RS13650	0.63	+1.1
3,100,453	-		HSERO_RS13650	0.78	+0.8
3,100,473	-		HSERO_RS13650	0.80	+1.5