Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13575

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,080,765	+		HSERO_RS13570	0.23	+0.4
3,080,891	-		HSERO_RS13570	0.33	+0.3
3,081,005	+		HSERO_RS13570	0.43	+0.2
3,081,070	+		HSERO_RS13570	0.48	+1.1
3,081,108	-		HSERO_RS13570	0.51	+0.1
3,081,243	-		HSERO_RS13570	0.62	-0.2
3,081,243	-		HSERO_RS13570	0.62	+1.2
3,081,489	+		HSERO_RS13570	0.82	+0.1
3,081,494	+		HSERO_RS13570	0.83	+0.5
3,081,705	-				+0.2
3,082,165	-		HSERO_RS13575	0.27	+0.4
3,082,274	-		HSERO_RS13575	0.33	+2.1
3,082,331	-		HSERO_RS13575	0.37	+0.6
3,082,449	+		HSERO_RS13575	0.45	+0.4
3,082,457	-		HSERO_RS13575	0.45	+0.1
3,082,457	-		HSERO_RS13575	0.45	+0.7
3,082,623	-		HSERO_RS13575	0.56	+0.8
3,082,822	+		HSERO_RS13575	0.68	+1.5
3,083,050	-		HSERO_RS13575	0.83	+0.6
3,083,120	-		HSERO_RS13575	0.87	+0.1
3,083,190	-				+1.3
3,083,395	+				+0.4
3,083,395	+				-0.4
3,083,830	-		HSERO_RS13580	0.53	-0.1
3,083,988	-		HSERO_RS13580	0.71	+1.0
3,084,039	-		HSERO_RS13580	0.76	+0.5
3,084,095	+		HSERO_RS13580	0.82	+0.5
3,084,119	+				+0.1
3,084,155	+		HSERO_RS13580	0.89	-0.6
3,084,160	+		HSERO_RS13580	0.89	+1.0