Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13565

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,078,126	-		HSERO_RS13560	0.25	-0.7
3,078,314	-		HSERO_RS13560	0.55	+1.2
3,078,366	-		HSERO_RS13560	0.64	-0.7
3,078,406	-		HSERO_RS13560	0.70	-1.1
3,078,494	-		HSERO_RS13560	0.84	-1.7
3,078,624	-				-0.5
3,078,743	-				-0.3
3,078,800	-				+0.4
3,079,011	+				+0.0
3,079,174	+				+0.9
3,079,378	-		HSERO_RS13565	0.35	+1.4
3,079,424	-		HSERO_RS13565	0.38	+0.6
3,079,550	+		HSERO_RS13565	0.46	+0.3
3,079,987	+		HSERO_RS13565	0.76	+0.1
3,079,995	-		HSERO_RS13565	0.76	+0.6
3,080,045	+		HSERO_RS13565	0.79	+0.9
3,080,145	+		HSERO_RS13565	0.86	+1.5
3,080,145	+		HSERO_RS13565	0.86	+0.5
3,080,450	-				-0.5
3,080,481	+				+2.2
3,080,691	-		HSERO_RS13570	0.17	+0.8
3,080,765	+		HSERO_RS13570	0.23	+0.4
3,080,891	-		HSERO_RS13570	0.33	+0.3
3,081,005	+		HSERO_RS13570	0.43	+0.2
3,081,070	+		HSERO_RS13570	0.48	+1.1
3,081,108	-		HSERO_RS13570	0.51	+0.1
3,081,243	-		HSERO_RS13570	0.62	-0.2
3,081,243	-		HSERO_RS13570	0.62	+1.2