Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS13520

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
3,069,933	-				-0.4
3,069,933	-				+0.1
3,069,963	-				-0.8
3,069,989	+				+0.3
3,069,989	+				+0.1
3,069,997	-				+0.7
3,070,007	-				-0.1
3,070,187	-				+0.7
3,070,310	-		HSERO_RS13510	0.56	+0.1
3,070,323	-		HSERO_RS13510	0.60	+0.1
3,070,492	-				+1.2
3,070,569	-		HSERO_RS13515	0.33	+0.4
3,070,752	+		HSERO_RS13515	0.87	+0.3
3,070,757	+		HSERO_RS13515	0.89	+0.9
3,070,762	+				+0.3
3,070,762	+				-0.4
3,070,770	-				-0.8
3,070,847	+				+1.2
3,070,847	+				+0.7
3,070,982	-		HSERO_RS13520	0.57	+0.9
3,071,007	+		HSERO_RS13520	0.70	+0.4
3,071,318	-				-3.1
3,071,424	-		HSERO_RS13525	0.21	-0.0
3,071,505	-		HSERO_RS13525	0.31	+0.2
3,071,675	+		HSERO_RS13525	0.51	+0.5