Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12865

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
2,934,004	-		HSERO_RS12860	0.88	+0.3
2,934,029	-		HSERO_RS12860	0.89	+0.8
2,934,097	+				-0.1
2,934,120	-				+1.3
2,934,320	+				+0.1
2,934,327	-				-0.9
2,934,401	+				-0.0
2,934,401	+				-0.6
2,934,401	+				-0.1
2,934,401	+				-0.6
2,934,407	+				+0.1
2,934,408	+				+0.0
2,934,409	-				-0.0
2,934,417	+				+0.1
2,934,417	+				-0.3
2,934,417	+				-0.2
2,934,488	+				-0.1
2,934,535	-				-0.3
2,934,678	+				-2.5
2,934,678	+				-0.0
2,934,678	+				-0.3
2,934,685	-				-0.1
2,934,686	-				-1.0
2,934,709	-				+0.7
2,934,858	+		HSERO_RS12865	0.27	+1.0
2,935,073	-		HSERO_RS12865	0.72	+0.2
2,935,135	+		HSERO_RS12865	0.85	+0.4
2,935,152	+		HSERO_RS12865	0.88	+0.9
2,935,233	-				-0.9
2,935,356	+				+0.2
2,935,356	+				+0.4
2,935,460	+				+0.4
2,935,633	+		HSERO_RS12870	0.23	-0.6
2,935,644	+		HSERO_RS12870	0.25	+0.1
2,935,661	+		HSERO_RS12870	0.28	-0.4
2,935,975	+		HSERO_RS12870	0.74	-0.3
2,936,136	+				-1.3
2,936,144	-				-0.1
2,936,168	-				+0.7