Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS12625

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
2,879,178	-				+1.0
2,879,257	+				-0.2
2,879,470	-		HSERO_RS12620	0.24	-0.2
2,879,544	-		HSERO_RS12620	0.33	-1.1
2,879,561	+		HSERO_RS12620	0.35	-0.6
2,879,576	-		HSERO_RS12620	0.36	+0.2
2,879,586	-		HSERO_RS12620	0.38	+0.3
2,879,752	+		HSERO_RS12620	0.57	+0.2
2,879,833	-		HSERO_RS12620	0.66	+0.0
2,879,941	+		HSERO_RS12620	0.78	-0.8
2,879,966	-		HSERO_RS12620	0.81	+0.0
2,879,993	-		HSERO_RS12620	0.84	-0.1
2,880,001	+		HSERO_RS12620	0.85	+0.3
2,880,155	-				-1.1
2,880,368	+		HSERO_RS12625	0.28	+1.9
2,880,787	-		HSERO_RS12625	0.81	+1.1
2,880,825	-		HSERO_RS12625	0.85	-0.1
2,880,921	+				+0.5
2,880,925	+				-0.4
2,881,046	+				+0.0
2,881,297	+		HSERO_RS12630	0.25	+0.1
2,881,407	+		HSERO_RS12630	0.41	-0.1
2,881,662	+		HSERO_RS12630	0.76	+0.6
2,881,810	+				-0.3
2,881,823	-				-1.2