Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11590

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
2,615,701	-		HSERO_RS11580	0.41	-0.4
2,615,922	+		HSERO_RS11580	0.66	+0.4
2,616,109	+		HSERO_RS11580	0.87	-0.7
2,616,117	-		HSERO_RS11580	0.88	+0.8
2,616,159	-				-1.1
2,616,401	-		HSERO_RS11585	0.33	-0.2
2,616,428	-		HSERO_RS11585	0.40	-0.7
2,616,572	-		HSERO_RS11585	0.74	-0.3
2,616,649	+				-0.3
2,616,666	+				-0.4
2,616,746	+		HSERO_RS11590	0.11	+0.4
2,616,746	+		HSERO_RS11590	0.11	+0.6
2,617,052	+		HSERO_RS11590	0.82	+0.8
2,617,104	+				+0.0
2,617,127	-				-1.4
2,617,129	-				-0.6
2,617,146	-				-0.0
2,617,206	-		HSERO_RS11595	0.22	-0.2
2,617,240	+		HSERO_RS11595	0.32	+0.2
2,617,545	+				+0.0
2,617,571	+				+0.1
2,617,709	-		HSERO_RS11600	0.66	-0.3
2,617,725	+		HSERO_RS11600	0.74	-0.7
2,617,725	+		HSERO_RS11600	0.74	-0.0
2,617,743	-		HSERO_RS11600	0.83	-0.5
2,617,745	+		HSERO_RS11600	0.84	-0.5
2,617,842	+				-0.1
2,617,978	+				+0.0
2,617,991	+				-0.1
2,618,018	+		HSERO_RS11605	0.11	-0.3