Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11185
Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Phenylacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
2,523,999 | + | HSERO_RS11180 | 0.71 | +0.5 | |
2,524,034 | + | HSERO_RS11180 | 0.73 | +0.6 | |
2,524,483 | - | +0.4 | |||
2,524,566 | - | -0.7 | |||
2,524,611 | + | -0.2 | |||
2,524,619 | - | -0.5 | |||
2,524,815 | - | HSERO_RS11185 | 0.16 | +1.0 | |
2,525,256 | - | HSERO_RS11185 | 0.51 | +0.1 | |
2,525,483 | - | HSERO_RS11185 | 0.69 | -0.8 | |
2,525,877 | - | -0.1 | |||
2,526,042 | - | -0.7 |
Or see this region's nucleotide sequence