Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10720

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS10710 and HSERO_RS10715 are separated by 110 nucleotidesHSERO_RS10715 and HSERO_RS10720 overlap by 4 nucleotidesHSERO_RS10720 and HSERO_RS10725 overlap by 4 nucleotides HSERO_RS10710: HSERO_RS10710 - thioredoxin, at 2,409,540 to 2,409,968 _RS10710 HSERO_RS10715: HSERO_RS10715 - peptidase, at 2,410,079 to 2,410,798 _RS10715 HSERO_RS10720: HSERO_RS10720 - alanine acetyltransferase, at 2,410,795 to 2,411,292 _RS10720 HSERO_RS10725: HSERO_RS10725 - DNA polymerase III, at 2,411,289 to 2,412,311 _RS10725 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -1 0 1at 2410.780 kb on + strandat 2410.792 kb on + strandat 2410.964 kb on + strand, within HSERO_RS10720at 2411.108 kb on - strand, within HSERO_RS10720

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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2,410,780 + +0.3
2,410,792 + -0.7
2,410,964 + HSERO_RS10720 0.34 +1.4
2,411,108 - HSERO_RS10720 0.63 +0.3

Or see this region's nucleotide sequence