Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10190

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
2,297,400	+				+2.3
2,297,481	+		HSERO_RS10180	0.66	+0.5
2,297,582	-				+1.4
2,297,596	-				+0.6
2,297,600	+				+0.6
2,297,752	-		HSERO_RS10185	0.30	+0.5
2,297,782	-		HSERO_RS10185	0.37	+0.8
2,297,855	-		HSERO_RS10185	0.55	+0.8
2,297,972	-		HSERO_RS10185	0.84	+1.3
2,298,044	-				+1.0
2,298,064	+				+0.6
2,298,064	+				-0.0
2,298,145	-		HSERO_RS10190	0.14	+1.5
2,298,273	+		HSERO_RS10190	0.31	+0.6
2,298,454	-		HSERO_RS10190	0.56	+0.1
2,298,593	-		HSERO_RS10190	0.76	+1.3
2,298,798	+				+0.2
2,298,805	-				+0.6
2,298,980	+		HSERO_RS10195	0.13	+0.7
2,298,982	-		HSERO_RS10195	0.13	+0.8
2,299,060	+		HSERO_RS10195	0.19	+0.5
2,299,202	+		HSERO_RS10195	0.30	+0.4
2,299,337	-		HSERO_RS10195	0.41	+0.7
2,299,487	+		HSERO_RS10195	0.52	-0.1
2,299,580	-		HSERO_RS10195	0.59	+0.9
2,299,649	-		HSERO_RS10195	0.65	+0.2