Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08530

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,942,855	-		HSERO_RS08525	0.42	+0.7
1,942,881	+		HSERO_RS08525	0.46	-0.4
1,943,118	-		HSERO_RS08525	0.80	-0.1
1,943,252	+				+1.0
1,943,265	-				+0.1
1,943,270	-				+0.3
1,943,307	+				-0.5
1,943,316	-				+0.3
1,943,379	-				-0.8
1,943,502	+				-0.4
1,943,502	+				-0.7
1,943,510	-				+1.8
1,943,883	-				+0.1
1,943,914	+		HSERO_RS08530	0.11	+1.2
1,944,196	-		HSERO_RS08530	0.50	+0.9
1,944,224	-		HSERO_RS08530	0.54	+0.9
1,944,250	-		HSERO_RS08530	0.58	+0.3
1,944,305	-		HSERO_RS08530	0.65	+1.4
1,944,658	-				+0.8
1,944,677	+				+0.5
1,944,778	+		HSERO_RS08535	0.16	+1.2
1,945,056	+		HSERO_RS08535	0.46	-0.1
1,945,115	-		HSERO_RS08535	0.53	+0.4
1,945,242	+		HSERO_RS08535	0.67	-0.5
1,945,242	+		HSERO_RS08535	0.67	+0.1
1,945,242	+		HSERO_RS08535	0.67	+0.3
1,945,242	+		HSERO_RS08535	0.67	+0.3
1,945,242	+		HSERO_RS08535	0.67	-0.1
1,945,550	-				+0.4