Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08155

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,861,131	+				-0.2
1,861,212	-				+1.8
1,861,324	+		HSERO_RS08150	0.30	-1.4
1,861,332	-		HSERO_RS08150	0.31	-0.2
1,861,418	-		HSERO_RS08150	0.46	+1.9
1,861,598	-		HSERO_RS08150	0.78	-0.5
1,861,655	-		HSERO_RS08150	0.88	-0.3
1,861,707	+				-0.4
1,861,715	-				-0.3
1,861,720	-				-0.2
1,861,786	-				-0.6
1,861,801	+				-0.8
1,861,972	+				-0.3
1,862,000	-				-0.7
1,862,000	-				-0.0
1,862,170	-				-0.1
1,862,273	-				-2.2
1,862,378	-		HSERO_RS08155	0.31	+0.1
1,862,618	-				-0.8
1,862,783	-		HSERO_RS08155	0.75	+0.9
1,862,969	-				+1.1
1,863,159	+		HSERO_RS08160	0.13	+0.1
1,863,470	-		HSERO_RS08160	0.47	-0.9
1,863,475	-		HSERO_RS08160	0.48	+0.8
1,863,475	-		HSERO_RS08160	0.48	-0.9
1,863,566	+		HSERO_RS08160	0.58	-0.7
1,863,574	-		HSERO_RS08160	0.59	-0.0
1,863,574	-				-2.4
1,863,611	-		HSERO_RS08160	0.63	+0.2
1,863,646	+		HSERO_RS08160	0.67	-0.4
1,863,699	+		HSERO_RS08160	0.73	-0.3
1,863,707	-		HSERO_RS08160	0.73	+0.2
1,863,732	-		HSERO_RS08160	0.76	-0.1
1,863,735	-		HSERO_RS08160	0.77	+0.3
1,863,737	-		HSERO_RS08160	0.77	-0.4
1,863,774	+		HSERO_RS08160	0.81	+0.5