Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08105

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,851,940	+		HSERO_RS08100	0.36	-1.0
1,851,950	+		HSERO_RS08100	0.36	-0.2
1,851,999	+		HSERO_RS08100	0.41	-2.7
1,852,002	-		HSERO_RS08100	0.41	-1.4
1,852,142	+		HSERO_RS08100	0.53	-1.0
1,852,437	+		HSERO_RS08100	0.78	-2.2
1,852,445	-		HSERO_RS08100	0.78	-0.8
1,852,481	-		HSERO_RS08100	0.82	-2.5
1,852,488	-		HSERO_RS08100	0.82	-2.2
1,852,709	-				-0.5
1,852,765	+				-0.3
1,852,773	-				+0.0
1,852,970	-				+1.3
1,853,278	+		HSERO_RS08105	0.30	+1.1
1,853,621	+		HSERO_RS08105	0.54	+0.8
1,853,699	+		HSERO_RS08105	0.60	+1.5
1,853,828	+		HSERO_RS08105	0.69	+1.7
1,853,883	+		HSERO_RS08105	0.73	+1.3
1,854,096	+		HSERO_RS08105	0.88	+1.0
1,854,417	-				-0.1
1,854,460	-		HSERO_RS08110	0.13	-0.4
1,854,541	-		HSERO_RS08110	0.21	+0.4
1,854,543	+		HSERO_RS08110	0.21	+0.6
1,854,551	-		HSERO_RS08110	0.22	+0.4
1,854,604	-		HSERO_RS08110	0.28	+0.5
1,854,919	+		HSERO_RS08110	0.60	-0.6
1,854,967	+		HSERO_RS08110	0.65	-0.6