Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07625

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,736,676	+		HSERO_RS07615	0.76	-0.6
1,736,676	+		HSERO_RS07615	0.76	-0.5
1,736,676	+		HSERO_RS07615	0.76	-0.7
1,736,681	+		HSERO_RS07615	0.78	+0.3
1,736,694	-		HSERO_RS07615	0.82	-0.1
1,736,836	-				+0.4
1,736,859	+				-0.8
1,736,959	-		HSERO_RS07620	0.23	-0.2
1,737,142	+				-0.2
1,737,195	+		HSERO_RS07620	0.65	+0.7
1,737,227	+		HSERO_RS07620	0.70	+0.5
1,737,227	+		HSERO_RS07620	0.70	+0.0
1,737,235	-		HSERO_RS07620	0.72	+0.3
1,737,235	-		HSERO_RS07620	0.72	-0.7
1,737,371	-				+3.1
1,737,448	+				+0.4
1,737,655	+				+0.2
1,737,761	-				-0.0
1,737,949	-		HSERO_RS07625	0.28	+0.5
1,738,552	-		HSERO_RS07625	0.86	+0.5
1,738,662	+				+0.1
1,738,887	+				-0.3
1,738,899	+				-0.3
1,739,111	+		HSERO_RS07630	0.24	+1.2
1,739,119	-		HSERO_RS07630	0.24	+0.3
1,739,156	+		HSERO_RS07630	0.27	-0.2
1,739,164	-		HSERO_RS07630	0.28	+0.2
1,739,260	+				+1.8
1,739,260	+		HSERO_RS07630	0.35	+0.2
1,739,362	+		HSERO_RS07630	0.42	-0.9
1,739,473	-		HSERO_RS07630	0.50	-0.2
1,739,521	+				-0.8