Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07595

Experiment: Carbon source Phenylacetic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS07585 and HSERO_RS07590 are separated by 154 nucleotidesHSERO_RS07590 and HSERO_RS07595 are separated by 106 nucleotidesHSERO_RS07595 and HSERO_RS07600 are separated by 173 nucleotides HSERO_RS07585: HSERO_RS07585 - tRNA (guanine-N1)-methyltransferase, at 1,730,604 to 1,731,377 _RS07585 HSERO_RS07590: HSERO_RS07590 - 50S ribosomal protein L19, at 1,731,532 to 1,731,915 _RS07590 HSERO_RS07595: HSERO_RS07595 - DNA mismatch repair protein MutT, at 1,732,022 to 1,732,693 _RS07595 HSERO_RS07600: HSERO_RS07600 - threonine-phosphate decarboxylase, at 1,732,867 to 1,733,826 _RS07600 Position (kb) 1732 1733Strain fitness (log2 ratio) -1 0 1at 1731.373 kb on - strandat 1732.037 kb on - strandat 1732.248 kb on - strand, within HSERO_RS07595at 1732.621 kb on + strand, within HSERO_RS07595at 1732.840 kb on - strandat 1732.847 kb on - strandat 1732.860 kb on - strandat 1733.209 kb on - strand, within HSERO_RS07600at 1733.246 kb on + strand, within HSERO_RS07600at 1733.465 kb on - strand, within HSERO_RS07600

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Phenylacetic 5 mM
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1,731,373 - +0.1
1,732,037 - -0.0
1,732,248 - HSERO_RS07595 0.34 +1.0
1,732,621 + HSERO_RS07595 0.89 -0.1
1,732,840 - +0.4
1,732,847 - -0.7
1,732,860 - -0.8
1,733,209 - HSERO_RS07600 0.36 -1.3
1,733,246 + HSERO_RS07600 0.39 -1.2
1,733,465 - HSERO_RS07600 0.62 -1.0

Or see this region's nucleotide sequence