Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07595
Experiment: Carbon source Phenylacetic 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Phenylacetic 5 mM |
---|---|---|---|---|---|
remove | |||||
1,731,373 | - | +0.1 | |||
1,732,037 | - | -0.0 | |||
1,732,248 | - | HSERO_RS07595 | 0.34 | +1.0 | |
1,732,621 | + | HSERO_RS07595 | 0.89 | -0.1 | |
1,732,840 | - | +0.4 | |||
1,732,847 | - | -0.7 | |||
1,732,860 | - | -0.8 | |||
1,733,209 | - | HSERO_RS07600 | 0.36 | -1.3 | |
1,733,246 | + | HSERO_RS07600 | 0.39 | -1.2 | |
1,733,465 | - | HSERO_RS07600 | 0.62 | -1.0 |
Or see this region's nucleotide sequence