Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS07530

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,719,802	+		HSERO_RS07520	0.80	-0.8
1,719,815	-		HSERO_RS07520	0.82	-0.1
1,719,935	+				+0.1
1,720,151	+		HSERO_RS07525	0.10	-0.5
1,720,152	-		HSERO_RS07525	0.10	+0.4
1,720,159	-		HSERO_RS07525	0.11	+0.3
1,720,321	+		HSERO_RS07525	0.34	+0.7
1,720,463	-		HSERO_RS07525	0.55	+0.3
1,720,555	+		HSERO_RS07525	0.68	-0.5
1,720,568	+		HSERO_RS07525	0.70	+0.4
1,720,753	-				-0.4
1,720,779	-				+0.0
1,720,970	+		HSERO_RS07530	0.30	+0.7
1,721,139	+				-0.2
1,721,300	+		HSERO_RS07530	0.80	+0.1
1,721,343	-		HSERO_RS07530	0.87	+0.3
1,721,420	+				-0.3
1,721,506	-		HSERO_RS07535	0.13	-0.8
1,721,617	-		HSERO_RS07535	0.28	-1.1
1,721,623	+		HSERO_RS07535	0.29	-0.0
1,721,658	-		HSERO_RS07535	0.33	-0.1
1,721,662	+		HSERO_RS07535	0.34	+0.4
1,721,691	+		HSERO_RS07535	0.38	+0.7
1,721,704	-				+0.0
1,721,791	+		HSERO_RS07535	0.51	-0.3
1,721,814	-		HSERO_RS07535	0.55	-0.3
1,721,917	-		HSERO_RS07535	0.69	+0.2
1,721,957	-				+0.8
1,722,057	+		HSERO_RS07535	0.88	-0.2
1,722,112	-				+0.4
1,722,269	+		HSERO_RS07540	0.17	+0.2
1,722,325	-		HSERO_RS07540	0.24	-0.2
1,722,326	+		HSERO_RS07540	0.24	+0.5
1,722,356	+		HSERO_RS07540	0.28	+0.8
1,722,361	+		HSERO_RS07540	0.29	-0.1