Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS06455

Experiment: Carbon source Phenylacetic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Phenylacetic 5 mM
1,456,859	+		HSERO_RS06450	0.19	-0.5
1,456,898	+		HSERO_RS06450	0.24	+0.2
1,456,959	-		HSERO_RS06450	0.30	+0.4
1,456,969	+		HSERO_RS06450	0.31	+0.2
1,456,996	-		HSERO_RS06450	0.34	-0.5
1,457,028	+				+0.2
1,457,276	+		HSERO_RS06450	0.65	-0.6
1,457,276	+		HSERO_RS06450	0.65	+0.1
1,457,284	-		HSERO_RS06450	0.66	+1.1
1,457,294	-		HSERO_RS06450	0.67	-0.2
1,457,492	-		HSERO_RS06450	0.88	+0.8
1,457,512	+				+0.4
1,457,607	-				-0.2
1,457,715	+				+1.0
1,457,715	+				-0.1
1,457,723	-				-0.4
1,457,745	+				+1.2
1,457,803	+				-0.4
1,457,803	+				-0.1
1,457,822	-				-0.4
1,457,870	+				+0.0
1,458,094	+		HSERO_RS06455	0.32	-0.5
1,458,102	-		HSERO_RS06455	0.33	-0.7
1,458,250	+		HSERO_RS06455	0.49	-0.7
1,458,435	+		HSERO_RS06455	0.70	-0.8
1,458,517	+		HSERO_RS06455	0.79	-0.1
1,458,531	-		HSERO_RS06455	0.80	+0.0
1,458,747	+				-0.1
1,458,867	-				-0.3
1,458,981	-		HSERO_RS06460	0.10	+0.2
1,459,085	+				-1.5
1,459,140	+		HSERO_RS06460	0.42	+0.3
1,459,187	+		HSERO_RS06460	0.51	+0.6
1,459,322	+		HSERO_RS06460	0.78	+0.8
1,459,617	+		HSERO_RS06465	0.31	-0.5
1,459,648	+		HSERO_RS06465	0.36	+0.3